• Anacystis Meneghini, 1837
• Anacystis aeruginosa (Zanardini) Drouet & Daily, 1948 accepted as Microcystis zanardinii (Hauck) P. Silva, 1996
• Anacystis amplivesiculata Gardner, 1927
• Anacystis anaptis B. Biswal
• Anacystis anomala Gardner, 1927
• Anacystis botryoides (Linnaeus) Meneghini
• Anacystis brunnea (A. Braun) Wolle
• Anacystis compacta Gardner, 1927
• Anacystis consociata Gardner
• Anacystis cyanea (Kützing) F.E. Drouet & W.A. Daily, 1952
• Anacystis cylindracea Gardner
• Anacystis dimidiata (Kützing) Drouet & Daily, 1952 accepted as Chroococcus dimidiatus (Kützing) Nägeli, 1849
• Anacystis distans Gardner
• Anacystis elabens (Brébisson) Setchell & Gardner, 1918 accepted as Aphanothece elabens (Brébisson) Elenkin, 1938
• Anacystis firma (Kützing) Drouet & Daily
• Anacystis furfuracea (Berkeley) Meneghini
• Anacystis gigas (W. West & G.S. West) Gardner
• Anacystis glauca Wolle, 1877 accepted as Microcystis glauca (Wolle) Drouet & Daily, 1939
• Anacystis gloeocapsoides Gardner, 1927
• Anacystis grevillei (M.J. Berkeley) Kützing
• Anacystis hyalina Chu
• Anacystis incerta (Lemmermann) F.E. Drouet & W.A. Daily, 1952 accepted as Aphanocapsa incerta (Lemmermann) Cronberg & Komárek, 1994
• Anacystis irregularis Gardner
• Anacystis limnetica (Lemmermann) Drouet & Daily, 1952 accepted as Chroococcus limneticus Lemmermann, 1898
• Anacystis magnifica Gardner, 1927 accepted as Asterocapsa magnifica (Gardner) J. Komárek, 1993
• Anacystis marginata Meneghini
• Anacystis marina (Hansgirg) Drouet & Dailey, 1948 accepted as Microcystis marina (Hansgirg) P.C. Silva, 1996
• Anacystis microsphaeria Gardner, 1927
• Anacystis minuta (C. Agardh) Meneghini
• Anacystis minutissima Gardner, 1927
• Anacystis montana (Lightfoot) Drouet & Daily, 1952 accepted as Gloeocapsa atrata Kützing, 1843
• Anacystis nidulans (Richt.) Drouet & Daily
• Anacystis nidulans Gardner
• Anacystis nigropurpurea Gardner
• Anacystis nigroviolacea Gardner
• Anacystis paludosa Rabenhorst
• Anacystis parasitica (Kützing) Trevisan, 1848 accepted as Aphanocapsa parasitica (Kützing) Komárek & Anagnostidis, 1995
• Anacystis peniocystis (Kützing) Drouet & Daily
• Anacystis pulchra Gardner, 1927 accepted as Asterocapsa pulchra (Gardner) J. Komárek, 1993
• Anacystis pulvereus (Wood) Wolle
• Anacystis purpurea C.C. Jao
• Anacystis radiata Gardner
• Anacystis reinboldii Richter, 1891 accepted as Microcystis reinboldii (Richter) Forti, 1907
• Anacystis rupestris (Lyngbye) Drouet & Daily
• Anacystis thermalis (Meneghini) Drouet & Daily, 1952
• Anacystis trochiscioides C.C. Jao
• Anacystis willei Gardner