• Blepharocysta Ehrenberg, 1873
• Blepharocysta compressa K.R. Gaarder, 1954
• Blepharocysta denticulata Nie, 1939
• Blepharocysta hermosillae M.C. Carbonell-Moore
• Blepharocysta hermosillai Carbonell-Moore, 1992
• Blepharocysta matzenaueri K.R. Gaarder, 1954
• Blepharocysta okamurae Abé, 1966
• Blepharocysta okamurai Abé, 1966 (unaccepted)
• Blepharocysta paulseni J. Schiller
• Blepharocysta paulsenii J. Schiller, 1937
• Blepharocysta schilleri (Matzenauer) Ballantine
• Blepharocysta splendormaris (Ehrenberg) Ehrenberg, 1873
• Blepharocysta splendor-maris (Ehrenberg) Ehrenberg, 1873
• Blepharocysta striata F. Schütt