• Botryodiplodia (P.A. Saccardo) P.A. Saccardo, 1884
• Botryodiplodia acicola (Sacc.) Petr., 1926
• Botryodiplodia ananassae (Sacc.) Petr., 1929 accepted as Lasiodiplodia theobromae (Pat.) Griffon & Maubl., 1909
• Botryodiplodia caespitosa (Berk. & Broome) Petr. & Syd., 1926 accepted as Diplodia caespitosa Berk. & Broome, 1850
• Botryodiplodia circinans (Berk. & Broome) Petr., 1924
• Botryodiplodia confluens (Berk. & Broome) Sacc., 1884 accepted as Diplodia confluens Berk. & Broome
• Botryodiplodia crustosa (Sacc. & Berl.) Petr. & Syd., 1927 accepted as Diaporthe crustosa Sacc. & Roum., 1881
• Botryodiplodia elasticae Petch, 1906 accepted as Lasiodiplodia theobromae (Pat.) Griffon & Maubl., 1909
• Botryodiplodia excelsa (P. Karst.) Petr. & Syd., 1927
• Botryodiplodia fraxini (Fr.) Sacc., 1884
• Botryodiplodia gallae (Schwein.) Petr. & Syd., 1926
• Botryodiplodia gossypii Ellis & Barthol., 1902 accepted as Botryosphaeria rhodina (Berk. & M.A. Curtis) Arx, 1970
• Botryodiplodia hypodermia (Sacc.) Petr., 1923
• Botryodiplodia juglandicola (Schwein.) Sacc., 1884 accepted as Botryosphaeria obtusa (Schwein.) Shoemaker, 1964
• Botryodiplodia juniperina (Peck) Petr. & Syd., 1927
• Botryodiplodia malorum (Berk.) Petr. & Syd., 1926 accepted as Botryosphaeria stevensii Shoemaker, 1964
• Botryodiplodia manihoticola Petr., 1926
• Botryodiplodia manihotis (Henn.) Petr., 1916
• Botryodiplodia palmarium (Cooke) Petr. & Syd., 1927 accepted as Botryodiplodia palmarum (Cooke) Petr. & Syd., 1927
• Botryodiplodia palmarum (Cooke) Petr. & Syd., 1927
• Botryodiplodia penzigii (Ferraris) Petr. & Syd., 1926
• Botryodiplodia phaseoli (Maubl.) Thirum., 1953 accepted as Macrophomina phaseolina (Tassi) Goid., 1947
• Botryodiplodia pinea (Desm.) Petr., 1922 accepted as Sphaeropsis sapinea (Fr.) Dyko & B. Sutton, 1980
• Botryodiplodia platanicola (Sacc.) Keissl., 1922 accepted as Diplodia platanicola Sacc.
• Botryodiplodia pomi (Mont. & Fr.) Cif., 1946 accepted as Schizothyrium pomi (Mont. & Fr.) Arx, 1959
• Botryodiplodia pyrenophora (Berk.) Sacc., 1884
• Botryodiplodia ribis (Fuckel) Petr., 1927 accepted as Botryosphaeria ribis Grossenb. & Duggar, 1911
• Botryodiplodia ricinicola (Sacc.) Petr., 1929
• Botryodiplodia riciniola (Sacc.) Petr., 1929 accepted as Botryodiplodia ricinicola (Sacc.) Petr., 1929
• Botryodiplodia saccharina Died.
• Botryodiplodia theobromae Pat., 1892 accepted as Lasiodiplodia theobromae (Pat.) Griffon & Maubl., 1909
• Botryodiplodia tubericola (Ellis & Everh.) Petr., 1923 accepted as Lasiodiplodia theobromae (Pat.) Griffon & Maubl., 1909
• Botryodiplodia ulmicola (Ellis & Everh.) Buisman, 1931