• Diphyes Bigelow, 1911 accepted as Lensia Totton, 1932 [Family: Diphyidae]
• Diphyes Blume, 1825 accepted as Bulbophyllum Du Petit-Thouars, 1822 [Family: Orchidaceae]
• Diphyes Browne, 1926 accepted as Lensia Totton, 1932 [Family: Diphyidae]
• Diphyes Chun, 1886 accepted as Lensia Totton, 1932 [Family: Diphyidae]
• Diphyes Cookson, 1965 † [Family: Gonyaulacaceae]
• Diphyes Cuvier, 1817 [Family: Diphyidae]
• Diphyes Gegenbaur, 1853 accepted as Sulculeolaria Blainville, 1830 [Family: Diphyidae]
• Diphyes Kriechbaumer, 1890 accepted as Diphyus Kriechbaumer, 1890 [Family: Ichneumonidae]
• Diphyes Quoy & Gaimard, 1833 accepted as Praya Quoy & Gaimard in de Blainville, 1834 [Family: Prayidae]
• Diphyes Sars, 1846 accepted as Sulculeolaria Blainville, 1830 [Family: Diphyidae]
• Diphyes Will, 1844 accepted as Muggiaea Busch, 1851 [Family: Diphyidae]
• Diphyes acuminata Leuckart, 1853 accepted as Chelophyes appendiculata (Eschscholtz, 1829)
• Diphyes antarctica Moser, 1925
• Diphyes appendicularis I.C. Cookson & A. Eisenack, 1970 †
• Diphyes appendiculata Eschscholtz, 1829 accepted as Chelophyes appendiculata (Eschscholtz, 1829)
• Diphyes arctica Chun, 1897 accepted as Dimophyes arctica (Chun, 1897)
• Diphyes bigelowi Browne, 1926 accepted as Lensia multicristata (Moser, 1925)
• Diphyes bojani (Eschscholtz, 1829)
• Diphyes borealis Chun, 1897 accepted as Dimophyes arctica (Chun, 1897)
• Diphyes chamissonis Huxley, 1859
• Diphyes colligerum (G.V. Deflandre & I.C. Cookson, 1955) I.C. Cookson †
• Diphyes conoidea (Keferstein & Ehlers, 1860) accepted as Lensia conoidea (Keferstein & Ehlers, 1860)
• Diphyes contorta Lens & van Riemsdijk, 1908 accepted as Chelophyes contorta (Lens & van Reimsdijk, 1908)
• Diphyes dispar Chamisso & Eysenhardt, 1821
• Diphyes dubia Quoy & Gaimard, 1833 accepted as Praya dubia (Quoy & Gaimard in de Blainville, 1830)
• Diphyes fowleri Bigelow, 1911 accepted as Lensia fowleri (Bigelow, 1911)
• Diphyes gracilis Gegenbaur, 1853 accepted as Chelophyes appendiculata (Eschscholtz, 1829)
• Diphyes kochii Will, 1844 accepted as Muggiaea kochi (Will, 1844)
• Diphyes latiusculus K. Matsuoka, 1974 †
• Diphyes mitra Huxley, 1859 accepted as Eudoxoides mitra (Huxley, 1859)
• Diphyes monstruosum (P. Tasch) R.J. Davey & G.L. Williams †
• Diphyes nudum I.C. Cookson, 1965 †
• Diphyes ovata Keferstein & Ehlers, 1860 accepted as Clausophyes ovata (Keferstein & Ehlers, 1860)
• Diphyes prayensis Quoy & Gaimard, 1833 accepted as Rosacea cymbiformis (delle Chiaje, 1830) accepted as Neorosacea cymbiformis (Delle Chiaje, 1822)
• Diphyes quadrivalvis Gegenbaur, 1853 accepted as Sulculeolaria quadrivalvis Blainville, 1834
• Diphyes sieboldi Kolliker, 1853 accepted as Chelophyes appendiculata (Eschscholtz, 1829)
• Diphyes spinulum (Drugg) L.E. Stover & W.R. Evitt †
• Diphyes subtilis Chun, 1886 accepted as Lensia subtilis (Chun, 1886)
• Diphyes subtiloides Lens & van Riemsdijk, 1908 accepted as Lensia subtiloides (Lens & van Riemsdijk, 1908)
• Diphyes truncata Sars, 1846 accepted as Lensia conoidea (Keferstein & Ehlers, 1860)
• Diphyes turgida Gegenbaur, 1853 accepted as Sulculeolaria turgida (Gegenbaur, 1853)