• Gloeocapsa Kützing, 1843
• Gloeocapsa acervata Gardner, 1927
• Gloeocapsa aeruginosa Kützing, 1843
• Gloeocapsa africana Cholnoky, 1952
• Gloeocapsa alpicola (Lyngbye) Bornet, 1903
• Gloeocapsa alpina (Nägeli) Brand, 1900
• Gloeocapsa ambigua Nägeli, 1849 accepted as Gloeocapsa alpina (Nägeli) Brand, 1900
• Gloeocapsa ampla Kützing, 1843
• Gloeocapsa ampla Vorce, 1881
• Gloeocapsa arenaria (Hassall) Rabenhorst, 1865
• Gloeocapsa atrata Kützing, 1843
• Gloeocapsa attingens Schiller, 1954
• Gloeocapsa aurata Stizenberger, 1854
• Gloeocapsa bahamensis Collins, 1920
• Gloeocapsa biformis Ercegovic, 1925
• Gloeocapsa bituminosa (Bory) Kützing, 1849
• Gloeocapsa botryoides Kützing, 1843
• Gloeocapsa calcarea Tilden, 1898
• Gloeocapsa calcicola Gardner, 1927
• Gloeocapsa caldariorum Rabenhorst, 1865
• Gloeocapsa cartilaginea Gardner, 1927
• Gloeocapsa chroococcoides Novácek, 1934 accepted as Gloeocapsopsis chroococcoides (Novácek) J. Komárek, 1993
• Gloeocapsa cohaerens (Brébisson) Golerbach
• Gloeocapsa compacta Kützing, 1845
• Gloeocapsa confluens Kützing accepted as Coccomyxa confluens (Kützing) Fott, 1974
• Gloeocapsa conglomerata Kützing, 1846
• Gloeocapsa conspicua Reinsch, 1867
• Gloeocapsa coracina Kützing, 1843
• Gloeocapsa crepidinum (Thuret) Thuret, 1876
• Gloeocapsa cryptococcoides Kützing, 1846
• Gloeocapsa cyanea Krieger, 1944 accepted as Gloeocapsopsis cyanea (Krieger) Komárek & Anagnostidis, 1994
• Gloeocapsa decorticans (A. Braun) Richter, 1925
• Gloeocapsa dermochroa Nägeli, 1849 accepted as Chondrocystis dermochroa (Nägeli) Komárek & Anagnostidis, 1995
• Gloeocapsa deusta (Meneghini) Kützing, 1849 accepted as Entophysalis deusta (Meneghini) F.E. Drouet & W.A. Daily, 1948
• Gloeocapsa didyma (Kützing) Kützing, 1846
• Gloeocapsa dirumpens Beck-Mannagetta, 1929
• Gloeocapsa dispersa
• Gloeocapsa dubia Wartmann, 1861
• Gloeocapsa dvorakii Novácek, 1929 accepted as Gloeocapsopsis dvorakii (Novácek) J. Komárek & K. Anagnostidis, 1986
• Gloeocapsa endocodia Vouk, 1936
• Gloeocapsa fenestralis Kützing, 1843 accepted as Gloeocapsa granosa (Berkeley) Kützing, 1845
• Gloeocapsa fuscolutea (Nägeli) Kützing, 1849
• Gloeocapsa fuscolutea Kirchner, 1878 accepted as Gloeocapsa alpina (Nägeli) Brand, 1900
• Gloeocapsa gelatinosa Kützing, 1843
• Gloeocapsa geminata Kützing, 1849
• Gloeocapsa gigantea (W. West) Hollerbach, Kosinskaja & Poljanskij, 1953 accepted as Chroococcus giganteus W. West, 1892
• Gloeocapsa gigas W. West & G.S. West, 1894
• Gloeocapsa granosa (Berkeley) Kützing, 1845
• Gloeocapsa haematodes Kützing, 1849
• Gloeocapsa helvetica (Nägeli) Starmach, 1964 accepted as Chroococcus helveticus Nägeli, 1849
• Gloeocapsa holstii Hieronymus, 1895
• Gloeocapsa ianthina Nägeli, 1849
• Gloeocapsa incrustata Chu, 1944
• Gloeocapsa insignis Thuret, 1854
• Gloeocapsa itzigsohnii Bornet, 1882 accepted as Gloeocapsa sanguinea (C. Agardh) Kützing, 1843
• Gloeocapsa juliana (Meneghini) Kützing, 1869
• Gloeocapsa kuetzingiana Nägeli, 1849
• Gloeocapsa lignicola Rabenhorst, 1865
• Gloeocapsa limnetica (Lemmermann) Hollerbach, 1938 accepted as Chroococcus limneticus Lemmermann, 1898
• Gloeocapsa lithophila (Erceg.) Hollerbach
• Gloeocapsa livida (Carmichael) Kützing, 1846
• Gloeocapsa magma (Brébisson) Hollerbach, 1924
• Gloeocapsa magma (Brébisson) Kützing, 1846 accepted as Gloeocapsopsis magma (Brébisson) J. Komárek & K. Anagnostidis, 1986
• Gloeocapsa mellea (Meneghini) Kützing, 1846
• Gloeocapsa minima (Keissler) Hollerbach, 1938 accepted as Chroococcus minimus (Keissler) Lemmermann, 1904
• Gloeocapsa minor (Kutzing) Hollerbach
• Gloeocapsa minuta (Kützing) Hollerbach, 1938 accepted as Chroococcus minutus (Kützing) Nägeli, 1849
• Gloeocapsa minutula Gardner, 1927
• Gloeocapsa monococca Kützing, 1843
• Gloeocapsa montana Kützing, 1843 accepted as Gloeocapsa atrata Kützing, 1843
• Gloeocapsa multisphaerica Gardner, 1927
• Gloeocapsa myxophila Beck-Mannagetta, 1931
• Gloeocapsa nigra (Meneghini) Grunow, 1865
• Gloeocapsa nigrescens Nägeli, 1857
• Gloeocapsa novacekii Komárek & Anagnotidis, 1995
• Gloeocapsa ocellata Rabenhorst, 1863
• Gloeocapsa opaca Nägeli, 1849
• Gloeocapsa ovalis Gardner, 1927
• Gloeocapsa palea Kützing, 1843 accepted as Gloeothece palea (Kützing) Nägeli, 1849
• Gloeocapsa paroliniana Wille, 1925
• Gloeocapsa peniocystis Kützing, 1846
• Gloeocapsa planctonica G.B. McGregor
• Gloeocapsa pleurocapsoides Novácek, 1929 accepted as Gloeocapsopsis pleurocapsoides (Novácek) J. Komárek & K. Anagnostidis, 1986
• Gloeocapsa polydermatica Kützing, 1846
• Gloeocapsa punctata Nägeli, 1849
• Gloeocapsa purpurea Kützing, 1846
• Gloeocapsa quaternata (Brébisson) Kützing, 1846
• Gloeocapsa ralfsiana (Harvey) Kützing
• Gloeocapsa ralfsii (Harvey) Kützing, 1846
• Gloeocapsa ralfsii (Harvey) Lemmermann, 1907 accepted as Gloeocapsa ralfsii (Harvey) Kützing, 1846
• Gloeocapsa reicheltii Richter, 1895
• Gloeocapsa rosea Kützing, 1846
• Gloeocapsa rubicunda Kützing, 1843
• Gloeocapsa rupestris Kützing, 1845
• Gloeocapsa rupicola Kützing, 1849
• Gloeocapsa sabulosa (Meneghini) Richter
• Gloeocapsa salina Hansgirg, 1893
• Gloeocapsa sanguinea (C. Agardh) Kützing, 1843
• Gloeocapsa sanguinolenta Kützing, 1843
• Gloeocapsa saxicola Wartmann, 1859