• Scaphita Fleming, 1828 † accepted as Scaphites Parkinson, 1811 † [Phylum: Mollusca]
• Scaphita Timofeev, 1973 ex Timofeev in Timofeev et al., 1976 † [Phylum: Acritarcha]
• Scaphita eniseica Timofeev in Timofeev et al., 1976 †