Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Subkingdom Hacrobia
- Subkingdom Harosa
- Infrakingdom Halvaria
- Superphylum Alveolata
- Superphylum Heterokonta
- Phylum Bacillariophyta
- Phylum Bigyra
- Phylum Chrysophyta accepted as Ochrophyta
- Phylum Diatomaceae accepted as Bacillariophyta
- Phylum Eustigmatophyta accepted as Ochrophyta
- Phylum Heterokontophyta accepted as Ochrophyta
- Phylum Hyphochytriomycota accepted as Pseudofungi
- Phylum Labyrinthista accepted as Bigyra
- Phylum Ochrophyta
- Class Aurearenophyceae accepted as Phaeothamniophyceae
- Class Aurophyceae accepted as Phaeothamniophyceae
- Class Bolidophyceae
- Class Chrysomeridophyceae
- Class Chrysoparadoxophyceae
- Class Chrysophyceae
- Class Dictyochophyceae
- Order Dictyochales
- Family Cornuaceae Gemeinhardt, 1930 † accepted as Dictyochaceae Wallich, 1865
- Family Dictyochaceae Wallich, 1865
- Genus Akbuluta H. Özdikmen, 2009 † accepted as Hannaites Y.J. Mandra, 1969 †
- Genus Arctyocha D. Bukry, 1985 †
- Genus Bachmannocena S. Locker, 1974 † accepted as Mesocena Ehrenberg, 1843 †
- Genus Bukryella T.V. Desikachary & P. Prema in P. Prema, 1996 † accepted as Hannaites Y.J. Mandra, 1969 †
- Genus Cannophilus Broch, 1907 † accepted as Cannopilus Haeckel, 1887 †
- Genus Cannopilus Haeckel, 1887 †
- Genus Caryocha D. Bukry & S. Monechi, 1985 †
- Genus Clathrium J. Frenguelli, 1938 †
- Genus Clathropyxidella G. Deflandre, 1938 †
- Genus Corbisema G.D. Hanna, 1928 †
- Genus Cornua P. Schulz, 1928 †
- Genus Crassicorbisema H.Y. Ling, 1981 † accepted as Naviculopsis Frenguelli, 1940 †
- Genus Deflandryocha L. Jerkovic, 1963 †
- Genus Dictyocha Ehrenberg, 1837
- Genus Dictyocha C.G. Ehrenberg, 1839 accepted as Dictyocha Ehrenberg, 1837
- Genus Distephanopsis P. Dumitrica in E. Brestenská, 1978 †
- Genus Distephanus E. Stöhr, 1880 accepted as Octactis J. Schiller, 1925
- Genus Eunaviculopsis Ling, 1977 †
- Genus Gleserocha K. McCartney, J. Witkowski & D.M. Harwood, 2014 †
- Genus Halicalyptra C.G. Ehrenberg, 1847
- Genus Hannaites Y.J. Mandra, 1969 †
- Genus Lyramula G.D. Hanna, 1928 †
- Genus Macrora Hanna, 1932 †
- Genus Mesocena Ehrenberg, 1843 †
- Genus Naviculopsis Frenguelli, 1940 †
- Genus Neonaviculopsis S. Locker & E. Martini, 1986 †
- Genus Nothyocha Deflandre, 1949 †
- Genus Octactis J. Schiller, 1925
- Genus Paracannopilus P. Dumitrica in E. Brestenská, 1978 †
- Genus Paradictyocha Frenguelli, 1940 †
- Genus Paramesocena S. Locker & E. Martini, 1986 †
- Genus Phyllodictyocha Deflandre, 1947 †
- Genus Pseudomicromarsupium K.E. Busen & S.W. Wise in P.F. Barker et al., 1977 †
- Genus Pseudorocella Deflandre, 1938 †
- Genus Schulzyocha K. McCartney, J. Witkowski & D.M. Harwood, 2011 †
- Genus Septamesocena A. Bachmann, 1970 †
- Genus Stephanocha K. McCartney & R.W. Jordan, 2015
- Genus Umpiocha K. McCartney, J. Witkowski & D.M. Harwood, 2011 †
- Genus Vallacerta G.D. Hanna, 1928 †
- Genus Variramus K. McCartney, S.W. Wise Jr., D.M. Harwood & R. Gersonde, 1990 †
- Family Dictyochales incertae sedis
- Family Dictyochidae accepted as Dictyochaceae Wallich, 1865
- Family Distephanaceae Locker, 1974 accepted as Dictyochaceae Wallich, 1865
- Family Lyramulaceae Tsurnura, 1928 † accepted as Dictyochaceae Wallich, 1865
- Family Mesocenaceae T.V. Desikachary & P. Prema, 1996 † accepted as Dictyochaceae Wallich, 1865
- Family Vallacertaceae Deflandre, 1950 † accepted as Dictyochaceae Wallich, 1865
- Order Florenciellales
- Order Pedinellales
- Order Rhizochromulinales
- Family Ciliophrydae accepted as Pedinellaceae Pascher, 1910
- Family Ciliophryidae accepted as Pedinellaceae Pascher, 1910
- Class Eustigmatophyceae
- Class Hyphochytriomycetes accepted as Hyphochytrea
- Class Olisthodiscophyceae
- Class Pelagophyceae
- Class Phaeophyceae
- Class Phaeosacciophyceae
- Class Phaeothamniophyceae
- Class Picophagea accepted as Picophagophyceae
- Class Picophagophyceae
- Class Pinguiophyceae
- Class Raphidophyceae
- Class Schizocladiophyceae
- Class Synchromophyceae
- Class Synurophyceae accepted as Chrysophyceae
- Class Tribophyceae accepted as Xanthophyceae
- Class Xanthophyceae
- Family Ochrophyta incertae sedis
- Phylum Oomycota accepted as Pseudofungi
- Phylum Phaeophyta accepted as Ochrophyta
- Phylum Pseudofungi
- Phylum Raphidophyta accepted as Ochrophyta
- Phylum Sagenista accepted as Bigyra
- Phylum Xanthophyta accepted as Ochrophyta
- Subphylum Bigyromonada
- Class Bigyromonadea accepted as Developea
- Family Kaonashiidae Weston, Eglit & Simpson, 2023
- Infrakingdom Rhizaria
- Kingdom Fungi
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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