Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
3 The last expanded taxon is highlighted
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- Biota
- Kingdom Animalia
- Phylum Acanthocephala
- Phylum Agmata †
- Phylum Animalia (awaiting allocation)
- Phylum Animalia incertae sedis
- Phylum Annelida
- Phylum Arthropoda
- Phylum Brachiopoda
- Phylum Bryozoa
- Phylum Cephalorhyncha incertae sedis
- Phylum Chaetognatha
- Phylum Chitinozoa †
- Phylum Chordata
- Phylum Cnidaria
- Phylum Ctenophora
- Phylum Cycliophora
- Phylum Cycloneuralia incertae sedis
- Phylum Ecdysozoa incertae sedis †
- Phylum Echinodermata
- Phylum Entoprocta
- Phylum Gastrotricha
- Phylum Gnathostomulida
- Phylum Hemichordata
- Phylum Hyolitha †
- Phylum Kinorhyncha
- Phylum Lobopoda †
- Phylum Loricifera
- Phylum Micrognathozoa
- Phylum Mollusca
- Phylum Monoblastozoa accepted as Animalia incertae sedis
- Phylum Nematoda
- Phylum Nematomorpha
- Phylum Nemertea
- Phylum Onychophora
- Phylum Orthonectida
- Phylum Phoronida
- Phylum Placozoa
- Phylum Platyhelminthes
- Class Cestoda
- Class Platyhelminthes (awaiting allocation)
- Class Platyhelminthes incertae sedis
- Class Trematoda
- Order Aspidogastrea (awaiting allocation)
- Order Aspidogastrida
- Order Azygiida
- Order Capsalidea
- Order Chimaericolidea
- Order Dactylogyrida (awaiting allocation)
- Order Dactylogyridea
- Order Diclybothriidea
- Order Digenea (awaiting allocation)
- Order Digenea incertae sedis
- Order Diplostomida
- Order Echinostomida
- Order Fasciolatoidea
- Order Gymnophalloidea (awaiting allocation)
- Order Gyrodactylidea
- Order Hemiuroidea (awaiting allocation)
- Order Lepocreadioidea (awaiting allocation)
- Order Mazocraeidea
- Order Monocotylidea
- Family Loimoidae Price, 1936
- Family Microbothriidae Price, 1936
- Family Monocotylidae Taschenberg, 1879
- Genus Alloheterocotyla Yamaguti, 1968 accepted as Decacotyle Young, 1967
- Genus Anoplocotyloides Young, 1967
- Genus Austrocalicotyle Szidat, 1970 accepted as Calicotyle Diesing, 1850
- Genus Calicotyle Diesing, 1850
- Genus Callicotyle Diesing, 1858 accepted as Calicotyle Diesing, 1850
- Genus Calliocotyle Scott, 1902 accepted as Calicotyle Diesing, 1850
- Genus Callocotyle Scott, 1905 accepted as Calicotyle Diesing, 1850
- Genus Callycotyle Monticelli, 1888 accepted as Calicotyle Diesing, 1850
- Genus Cathariotrema Johnston & Tiegs, 1922
- Genus Clemacotyle Young, 1967
- Genus Dasybatotrema Price, 1938
- Genus Decacotyle Young, 1967
- Genus Denarycotyle Pulido-Flores, Monks & Violante-González, 2015
- Genus Dendromonocotyle Hargis, 1955
- Genus Dictyocotyle Nybelin, 1941
- Genus Diploheterocotyla Yamaguti, 1965 accepted as Heterocotyle Scott, 1904
- Genus Electrocotyle Vaughan, Chisholm & Hansen, 2016
- Genus Empruthotrema Johnston & Tiegs, 1922
- Genus Euzetia Chisholm & Whittington, 2001
- Genus Gymnocalicotyle Nybelin, 1941 accepted as Calicotyle Diesing, 1850
- Genus Heliocotyle Neifar, Euzet & Ben Hassine, 1999
- Genus Heterocotyle Scott, 1904
- Genus Holocephalocotyle Derouiche, Neifar, Gey, Justine & Tazerouti, 2019
- Genus Horricauda Tripathi, 1959 accepted as Neoheterocotyle Hargis, 1955
- Genus Malalophus Chisholm & Whittington, 2009
- Genus Mehracotyle Neifar, Euzet & Ben Hassine, 2002
- Genus Meristocotyle Rossbach, 1906 accepted as Merizocotyle Cerfontaine, 1894
- Genus Merizocotyle Cerfontaine, 1894
- Genus Monocotyle Taschenberg, 1878
- Genus Mycteronastes Kearn & Beverley-Burton, 1990
- Genus Myliocotyle Neifar, Euzet & Ben Hassine, 1999
- Genus Neoheterocotyle Hargis, 1955
- Genus Papillicotyle Young, 1967 † accepted as Decacotyle Young, 1967
- Genus Papillocotyle
- Species Papillocotyle floridana
- Genus Peruanocotyle Chero, Cruces, Sáez & Luque, 2018
- Genus Quadritestis Gomez del Prado & Euzet, 1997
- Genus Septesinus Chisholm, 2013
- Genus Septitrema Kheddam, Chisholm & Tazerouti, 2020
- Genus Spinuris Doran, 1953
- Genus Squalotrema Kearn & Green, 1983
- Genus Thaumatocotyle Scott, 1904
- Genus Thaumatocotyle Odhner, 1910
- Genus Timofeevia Chisholm, Wheeler & Beverley-Burton, 1995
- Genus Triloculotrema Kearn, 1993
- Genus Troglocephalus Young, 1967
- Genus Tympanocirrus Tripathi, 1959 accepted as Monocotyle Taschenberg, 1878
- Order Monogenea (awaiting allocation)
- Order Monopisthocotylea (awaiting allocation)
- Order Montchadskyellidea
- Order Opisthorchiida
- Order Paramphistomoidea (awaiting allocation)
- Order Plagiorchiida
- Order Polyopisthocotylea
- Order Polyopisthocotylea (awaiting allocation)
- Order Polystomatidea
- Order Stichocotylida
- Order Strigeidida
- Order Trematoda (awaiting allocation)
- Order Trematoda incertae sedis
- Order Zoogonoidea (awaiting allocation)
- Genus Kunckelia Künstler, 1881
- Genus Künckelia Künstler, 1881 accepted as Kunckelia Künstler, 1881
- Class Turbellaria
- Phylum Pogonophora accepted as Siboglinidae Caullery, 1914
- Phylum Porifera
- Phylum Priapula accepted as Priapulida
- Phylum Priapulida
- Phylum Problematica † accepted as Animalia incertae sedis
- Phylum Rhombozoa
- Phylum Rotifera
- Phylum Scalidophora incertae sedis
- Phylum Sipuncula
- Phylum Tardigrada
- Phylum Trace fossils †
- Phylum Vendobionta †
- Phylum Vestimentifera accepted as Siboglinidae Caullery, 1914
- Phylum Vetulicolia †
- Phylum Vinctiplicata incertae sedis †
- Phylum Xenacoelomorpha
- Genus Trilobocaris Pribyl, 1953 †
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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