Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Class Agaricomycetes
- Order Agaricales
- Family Agaricaceae
- Family Agaricales incertae sedis
- Family Amanitaceae E.-J. Gilbert, 1940
- Family Arachniaceae accepted as Agaricaceae
- Family Asterogastraceae accepted as Hydnangiaceae
- Family Biannulariaceae W. Jülich, 1981
- Family Bolbitiaceae
- Family Broomeiaceae
- Family Callistosporiaceae A. Vizzini, G. Consiglio, M. Marchetti & P. Alvarado, 2020
- Family Clavariaceae
- Family Clitocybaceae A. Vizzini, G. Consiglio & M. Marchetti, 2020
- Family Coprinaceae accepted as Agaricaceae
- Family Cortinariaceae
- Family Cribbeaceae accepted as Cortinariaceae
- Family Cribbiaceae accepted as Cortinariaceae
- Family Cyphellaceae
- Family Entolomataceae
- Family Fistulinaceae
- Family Gigaspermataceae Jülich, 1981 accepted as Cortinariaceae
- Family Hemigasteraceae
- Family Hemigastraceae accepted as Hemigasteraceae
- Family Hydnangiaceae
- Family Hygrophoraceae
- Family Hymenogasteraceae accepted as Strophariaceae
- Family Hymenogastraceae accepted as Strophariaceae
- Family Inocybaceae
- Family Lepiotaceae accepted as Agaricaceae
- Family Lycoperdaceae F. Berchtold & J.S. Presl,1820
- Family Lyophyllaceae
- Family Marasmiaceae
- Family Mycenaceae
- Family Mycenastraceae accepted as Agaricaceae
- Family Mycospongiaceae accepted as Agaricales incertae sedis
- Family Niaceae Jülich, 1982
- Family Nidulariaceae accepted as Agaricaceae
- Family Omphalotaceae A. Bresinsky, 1985
- Family Palaeoclavariaceae †
- Family Phelloriniaceae
- Family Physalacriaceae
- Family Pleurotaceae
- Family Pluteaceae
- Family Podaxaceae accepted as Agaricaceae
- Family Porotheleaceae Murrill, 1916
- Family Psathyrellaceae
- Family Pterulaceae
- Family Rhodophyllaceae accepted as Entolomataceae
- Family Schizophyllaceae
- Family Secotiaceae accepted as Agaricaceae
- Family Strophariaceae
- Family Torrendiaceae accepted as Amanitaceae E.-J. Gilbert, 1940
- Family Tricholomataceae
- Genus Aeruginospora F. von Höhnel, 1908
- Genus Amparoina Singer, 1958
- Genus Arrhenia E.M. Fries, 1849
- Genus Arthromyces T.J. Baroni & Lodge, 2007
- Genus Arthrosporella Singer, 1970
- Genus Asproinocybe R. Heim, 1970
- Genus Aspropaxillus Kühner & Maire, 1934 accepted as Leucopaxillus Boursier, 1925
- Genus Asterotus Singer, 1943 accepted as Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Genus Austroclitocybe J. Raithelhuber, 1972
- Genus Austroomphaliaster N. Garrido, 1988
- Genus Boehmia Raddi, 1806 accepted as Arrhenia E.M. Fries, 1849
- Genus Callistodermatium R. Singer, 1981
- Genus Cantharellopsis Kuyper, 1986
- Genus Cantharellula R. Singer, 1936
- Genus Caulorhiza J.W. Lennox, 1979
- Genus Cellypha Donk, 1959
- Genus Clavomphalia E. Horak, 1987
- Genus Conchomyces Overeem in Heyne, 1927
- Genus Coolia Huijsman, 1943 accepted as Squamanita Imbach, 1946
- Genus Corniola S.F. Gray, 1821 accepted as Arrhenia E.M. Fries, 1849
- Genus Cortinellus Roze, 1876 accepted as Tricholoma (E.M. Fries) Staude, 1857
- Genus Cynema Maas Geesteranus & E. Horak, 1995
- Species Cynema alutacea Maas Geest. & E. Horak, 1995
- Genus Cyphellocalathus R. Agerer, 1981
- Genus Delicatula Fayod, 1889
- Genus Dennisiomyces Singer, 1955
- Genus Dermoloma J.E. Lange ex Herink, 1959
- Genus Dictyolus Quélet, 1886 accepted as Arrhenia E.M. Fries, 1849
- Genus Dissoderma (A.H. Smith & R. Singer) R. Singer, 1974 accepted as Squamanita Imbach, 1946
- Genus Fayodia Kühner, 1930
- Genus Gamundia Raithelhuber, 1979
- Genus Geotus Pilát & Svrček, 1953 accepted as Arrhenia E.M. Fries, 1849
- Genus Giacomia A. Vizzini & M. Contu in Vizzini, Ercole & Contu, 2012
- Genus Glutinaster Earle, 1909 accepted as Tricholoma (E.M. Fries) Staude, 1857
- Genus Gyrophila Quélet, 1886 accepted as Tricholoma (E.M. Fries) Staude, 1857
- Genus Haasiella Kotlaba & Pouzar, 1966
- Genus Helotium Tode, 1790 accepted as Omphalina Quélet, 1886
- Genus Heterosporula (Singer) Kühner, 1980 accepted as Gamundia Raithelhuber, 1979
- Genus Horakomyces J. Raithelhuber, 1983 accepted as Melanomphalia M.P. Christiansen, 1936
- Genus Hygroaster Singer, 1955
- Genus Infundibulicybe Harmaja, 2003
- Genus Lepista S. Imai, 1937
- Genus Lepistella T.J. Baroni & Ovrebo, 2007
- Genus Leptoglossum P.A. Karsten, 1879 accepted as Arrhenia E.M. Fries, 1849
- Genus Leptotus P.A. Karsten, 1879 accepted as Arrhenia E.M. Fries, 1849
- Genus Leucocortinarius (J.E. Lange) Singer, 1945
- Genus Leucoinocybe Singer, 1943
- Genus Leuco-inocybe Singer, 1943 accepted as Leucoinocybe Singer, 1943
- Genus Leucopaxillus Boursier, 1925
- Genus Leucopholiota (H. Romagnesi) O.K. Miller, T.J. Volk & A.E. Bessette, 1996
- Genus Lulesia Singer, 1970
- Genus Mastoleucomyces Battarra ex Kuntze, 1891 accepted as Tricholoma (E.M. Fries) Staude, 1857
- Genus Megatricholoma G. Kost, 1984 accepted as Tricholoma (E.M. Fries) Staude, 1857
- Genus Melaleuca Patouillard, 1887 accepted as Melanoleuca Patouillard, 1897
- Genus Melanoleuca Patouillard, 1897
- Genus Melanomphalia M.P. Christiansen, 1936
- Genus Mniopetalum Donk & Singer, 1962 accepted as Rimbachia Patouillard, 1891
- Genus Monomyces Battarra ex F.S. Earle, 1909 accepted as Tricholoma (E.M. Fries) Staude, 1857
- Genus Mycenella (J.E. Lange) Singer, 1938
- Genus Mycoalvimia R. Singer, 1981
- Genus Myxomphalia Hora, 1960
- Genus Neoclitocybe R. Singer, 1962
- Genus Nothoclavulina Singer, 1970
- Genus Notholepista A. Vizzini & M. Contu in Vizzini, Ercole & Contu, 2012
- Genus Omphalia (Persoon) S.F. Gray, 1821 accepted as Pseudoclitocybe (Singer) Singer, 1956
- Genus Omphalia (E.M. Fries) Staude, 1857 accepted as Omphalina Quélet, 1886
- Genus Omphaliaster Lamoure, 1971
- Genus Omphalina Quélet, 1886
- Genus Omphalius Roussel, 1806 accepted as Pseudoclitocybe (Singer) Singer, 1956
- Genus Palaeocephala Singer, 1962
- Genus Paralepista Raithelhuber, 1981
- Genus Paralepistopsis A. Vizzini in Vizzini & Ercole, 2012
- Genus Peglerochaete B.M. Sarwal & M.V. Locquin, 1983
- Genus Pegleromyces R. Singer, 1981
- Genus Phaeomycena R. Heim ex Singer & Digilio, 1966
- Genus Phaeotellus R. Kuhner & D. Lamoure, 1972 accepted as Omphalina Quélet, 1886
- Genus Phalomia Nieuwland, 1916 accepted as Omphalina Quélet, 1886
- Genus Phlebophora Léveillé, 1841 accepted as Tricholoma (E.M. Fries) Staude, 1857
- Genus Phyllotopsis E.-J. Gilbert & Donk ex R. Singer, 1936
- Genus Phyllotremella Lloyd, 1920 accepted as Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Genus Phyllotus P.A. Karsten, 1879 accepted as Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Genus Physocystidium R. Singer, 1962
- Genus Pleurella E. Horak, 1971
- Genus Pleuromycenula R. Singer, 1974 accepted as Rimbachia Patouillard, 1891
- Genus Pleurotopsis (P.C. Hennings) Earle, 1909 accepted as Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Genus Pogonoloma (Singer) M. Sánchez-García in Sánchez-García, Matheny, Palfner & Lodge, 2014
- Genus Porpoloma Singer, 1952
- Genus Psammospora Fayod, 1893 accepted as Melanoleuca Patouillard, 1897
- Genus Pseudoarmillariella (R. Singer) R. Singer, 1956
- Genus Pseudobaeospora Singer, 1942
- Genus Pseudoclitocybe (Singer) Singer, 1956
- Genus Pseudoclitopilus A. Vizzini & M. Contu in Vizzini, Ercole & Contu, 2012
- Genus Pseudohiatula (Singer) Singer, 1938
- Genus Pseudohygrophorus Velenovský, 1939
- Genus Pseudolasiobolus R. Agerer, 1983
- Genus Pseudoomphalina (R. Singer) R. Singer, 1956
- Genus Pseudotricholoma (Singer) M. Sánchez-García & P.B. Matheny in Sánchez-García, Matheny, Palfner & Lodge, 2014
- Genus Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Genus Retocybe Velenovský, 1947 accepted as Delicatula Fayod, 1889
- Genus Rhodocyphella W.B. Cooke, 1961 accepted as Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Genus Rimbachia Patouillard, 1891
- Genus Ripartites P.A. Karsten, 1879
- Genus Rubeolarius Raithelhuber, 1981
- Genus Sclerostilbum Povah, 1932 accepted as Tilachlidiopsis K. Keissler, 1924
- Genus Scytinotopsis Singer, 1936 accepted as Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Genus Sphaerocephalus Battarra ex F.S. Earle, 1909 accepted as Tricholoma (E.M. Fries) Staude, 1857
- Genus Squamanita Imbach, 1946
- Genus Stachyomphalina H.E. Bigelow, 1979 accepted as Gamundia Raithelhuber, 1979
- Genus Stanglomyces J. Raithelhuber, 1986
- Genus Stigmatolemma Kalchbrenner, 1882 accepted as Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Genus Tilachlidiopsis K. Keissler, 1924
- Genus Tilotus Kalchbrenner, 1881 accepted as Phyllotopsis E.-J. Gilbert & Donk ex R. Singer, 1936
- Genus Tomentifolium Murrill, 1903 accepted as Phyllotopsis E.-J. Gilbert & Donk ex R. Singer, 1936
- Genus Tricholoma (E.M. Fries) Staude, 1857
- Genus Tricholomopsis R. Singer, 1936
- Genus Tricholosporum G. Guzmán, 1975
- Genus Trigonipes Velenovský, 1939 accepted as Clitocybe (E.M. Fries) Staude, 1857
- Genus Ugola Adanson, 1763
- Genus Urceolus Velenovský, 1939 accepted as Resupinatus C.G.D. Nees ex S.F. Gray, 1821
- Family Tulostomataceae accepted as Agaricaceae
- Family Typhulaceae
- Family Volvariaceae accepted as Pluteaceae
- Family Xerulaceae accepted as Physalacriaceae
- Genus Annularia Rafinesque, 1815
- Order Agaricomycetes incertae sedis
- Order Agaricomycetidae incertae sedis
- Order Atheliales
- Order Auriculariales
- Order Boletales
- Order Cantharellales
- Order Corticiales
- Order Geastrales
- Order Gloeophyllales
- Order Gomphales
- Order Hymenochaetales
- Order Hysterangiales
- Order Phallales
- Order Polyporales
- Order Russulales
- Order Sebacinales
- Order Sistotremastrales
- Order Thelephorales
- Order Trechisporales
- Class Agaricostilbomycetes
- Class Atractiellomycetes
- Class Basidiomycota incertae sedis
- Class Classiculomycetes
- Class Cryptomycocolacomycetes
- Class Cystobasidiomycetes
- Class Dacrymycetes
- Class Entorrhizomycetes
- Class Exobasidiomycetes
- Class Geminibasidiomycetes
- Class Microbotryomycetes
- Class Mixiomycetes
- Class Pucciniomycetes
- Class Tremellomycetes
- Class Tritirachiomycetes
- Class Ustilaginomycetes
- Class Wallemiomycetes
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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