Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Order Acarosporales
- Family Acarosporaceae A. Zahlbruckner, 1906
- Genus Acarospora A. Massalongo, 1852
- Genus Acarosporomyces Ciferri & Tomaselli, 1953 accepted as Pleopsidium Körber, 1855
- Genus Biatorellopsis C.W. Dodge, 1965 accepted as Pleopsidium Körber, 1855
- Genus Caeruleum K. Knudsen & L. Arcadia in Arcadia & Knudsen, 2012
- Genus Cathisinia J. Stirton, 1888 accepted as Sarcogyne Flotow, 1851
- Genus Endocena Crombie, 1876
- Genus Eschatogonia Trevisan, 1853
- Genus Glypholecia Nylander, 1853
- Genus Glypholeciomyces Ciferri & Tomaselli, 1953 accepted as Glypholecia Nylander, 1853
- Genus Gussonea Tornabene, 1848-1849(?) accepted as Pleopsidium Körber, 1855
- Genus Laureriella Hepp, 1867 accepted as Glypholecia Nylander, 1853
- Genus Lithoglypha F.A. Brusse, 1988
- Genus Myriosperma Nägeli in Hepp, 1853 accepted as Sarcogyne Flotow, 1851
- Genus Myriospora Nägeli in Hepp, 1853 accepted as Acarospora A. Massalongo, 1852
- Genus Pleopsidium Körber, 1855
- Genus Polysporina A. Vezda, 1978
- Genus Polysporinopsis Vezda, 2002
- Genus Sarcogyne Flotow, 1850 accepted as Polysporina A. Vezda, 1978
- Genus Sarcogyne Flotow, 1851
- Genus Silobia M. Westberg & M. Wedin in Westberg et al., 2010
- Genus Stereopeltis A. Franzoni & G. De Notaris in G. De Notaris, 1861 accepted as Sarcogyne Flotow, 1851
- Genus Thelocarpella P. Navarro-Rosinés & Cl. Roux in P. Navarro-Rosinés et al., 1999
- Species Thelocarpella gordensis Nav.-Ros. & Cl. Roux, 1999
- Genus Trimmatothelopsis Zschacke, 1934
- Order Agyriales
- Order Baeomycetales
- Order Candelariales
- Order Lecanorales
- Order Lecanoromycetes incertae sedis
- Order Lecanoromycetidae incertae sedis
- Order Lecideales
- Order Ostropales
- Order Ostropomycetidae incertae sedis
- Order Peltigerales
- Order Pertusariales
- Order Rhizocarpales
- Order Sarrameanales
- Order Teloschistales
- Order Umbilicariales
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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