Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Order Arachnomycetales
- Order Ascosphaerales
- Order Chaetothyriales
- Order Chaetothyriomycetidae incertae sedis
- Order Coryneliales
- Order Eurotiales
- Order Eurotiomycetes incertae sedis
- Order Eurotiomycetidae incertae sedis
- Order Mycocaliciales
- Order Onygenales
- Order Pyrenolales accepted as Pyrenulales
- Order Pyrenulales
- Order Verrucariales
- Family Adelococcaceae
- Family Verrucariaceae
- Genus Acrotellomyces Ciferri & Tomaselli, 1953 accepted as Thelidium A. Massalongo, 1855
- Genus Acrotellum Tomaselli & Ciferri, 1952 accepted as Thelidium A. Massalongo, 1855
- Genus Actinothecium Flotow, 1855 accepted as Verrucaria H.A. Schrader, 1794
- Genus Amphoridium A. Massalongo, 1852 accepted as Verrucaria H.A. Schrader, 1794
- Genus Amphoroblastia Servít, 1953 accepted as Polyblastia A. Massalongo, 1852
- Genus Anthracocarpon Breuss, 1996
- Genus Atla S. Savic & L. Tibell, 2008
- Genus Awasthiella K.P. Singh, 1980
- Genus Bachmannia Zschacke, 1934 accepted as Verrucaria H.A. Schrader, 1794
- Genus Bagliettoa A. Massalongo, 1853 accepted as Verrucaria H.A. Schrader, 1794
- Genus Bellemerella P. Navarro-Rosinés & C. Roux, 1997
- Genus Bogoriellomyces Ciferri & Tomaselli, 1954 accepted as Bogoriella A. Zahlbruckner, 1928
- Genus Bohleria Trevisan, 1860 accepted as Placidiopsis Beltramini, 1858
- Genus Bottariomyces Ciferri & Tomaselli, 1953 accepted as Thelidium A. Massalongo, 1855
- Genus Bunodea A. Massalongo, 1855 accepted as Thelidium A. Massalongo, 1855
- Genus Capnia Ventenat, 1799 accepted as Dermatocarpon Eschweiler, 1824
- Genus Catapyrenium Flotow, 1850
- Genus Catopyrenium Flotow ex Körber, 1855 accepted as Catapyrenium Flotow, 1850
- Genus Chrooicia Trevisan, 1861 accepted as Thelidium A. Massalongo, 1855
- Genus Clauzadella P. Navarro-Rosinés & C. Roux, 1996
- Genus Clavascidium Breuss, 1996
- Genus Coenicia Trevisan, 1861 accepted as Thelidium A. Massalongo, 1855
- Genus Coenoicia Trevisan, 1861 accepted as Thelidium A. Massalongo, 1855
- Genus Coniothele Norman, 1868 accepted as Verrucaria H.A. Schrader, 1794
- Genus Dermatocarpella H. Harada, 1993 accepted as Placidium A. Massalongo, 1855
- Genus Dermatocarpon Eschweiler, 1824
- Genus Dermatocarpon W. Mann, 1825 accepted as Endocarpon J. Hedwig, 1789
- Genus Diederimyces J. Etayo, 1995
- Genus Dimerisma Clements, 1909 accepted as Spheconisca (Norman) Norman, 1876
- Genus Encliopyrenia Trevisan, 1860 accepted as Verrucaria H.A. Schrader, 1794
- Genus Endocarpidium J. Müller Arg., 1862 accepted as Placidiopsis Beltramini, 1858
- Genus Endocarpomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Dermatocarpon Eschweiler, 1824
- Genus Endocarpon J. Hedwig, 1789
- Genus Endopyreniomyces E.A. Thomas, 1939 accepted as Endocarpon J. Hedwig, 1789
- Genus Endopyrenium Flotow in Schuchart, 1855 accepted as Catapyrenium Flotow, 1850
- Genus Entosthelia (Wallroth) Hue, 1915 accepted as Dermatocarpon Eschweiler, 1824
- Genus Epistictum Trevisan, 1869 accepted as Dermatocarpon Eschweiler, 1824
- Genus Euspheconisca (F.E.T. Bachmann) A. Zahlbruckner, 1931
- Genus Glomerilla Norman, 1869
- Genus Graphidula Norman, 1853 accepted as Verrucaria H.A. Schrader, 1794
- Genus Haleomyces D.L. Hawksworth & T.L. Esslinger, 1993
- Genus Halospora (H. Zschacke) R. Tomaselli & R. Ciferri, 1952 accepted as Polyblastia A. Massalongo, 1852
- Genus Henrica Bouly de Lesdain, 1921
- Genus Heterocarpon J. Müller Arg., 1885
- Genus Heterophracta (P.A. Saccardo & D. Saccardo) Theissen & H. Sydow, 1918 accepted as Merismatium Zopf, 1898
- Genus Heteroplacidium Breuss, 1996
- Genus Holospora (H. Zschacke) R. Tomaselli & R. Ciferri, 1952 accepted as Polyblastia A. Massalongo, 1852
- Genus Holosporomyces Ciferri & Tomaselli, 1953 accepted as Polyblastia A. Massalongo, 1852
- Genus Hyalopyrenia H. Harada, 1996
- Genus Hydropunctaria C. Keller, C. Gueidan & H. Thüs, 2009
- Genus Involucrocarpon Servít, 1953 accepted as Catapyrenium Flotow, 1850
- Genus Involucropyrenium Breuss, 1996
- Genus Involucrothele Servít, 1953 accepted as Thelidium A. Massalongo, 1855
- Genus Kalbiana A. Henssen in K. Kalb, 1988
- Genus Lauderlindsaya J.C. David & D.L. Hawksworth, 1989
- Genus Leightonia Trevisan, 1853 accepted as Endocarpon J. Hedwig, 1789
- Genus Lenormandia Delise in Desmazières, 1841 accepted as Normandina Nylander, 1855
- Genus Lesdainea Harmand in Bouly de Lesdain, 1910 accepted as Trimmatothele Norman ex A. Zahlbruckner in Engler & Prantl, 1903
- Genus Leucocarpia Vezda, 1969
- Genus Leucocarpopsis G. Salisbury, 1975
- Genus Lithocia S.F. Gray, 1821 accepted as Verrucaria H.A. Schrader, 1794
- Genus Lithoecis F.E. Clements, 1909 accepted as Verrucaria H.A. Schrader, 1794
- Genus Lithosphaeria Beckhaus ex Körber, 1863 accepted as Psoroglaena J. Müller Arg., 1891
- Genus Lithothelidium M. Choisy, 1954 accepted as Polyblastia A. Massalongo, 1852
- Genus Macentina Vezda, 1973
- Genus Magnussoniolichen Tomaselli & Ciferri, 1952 accepted as Polyblastia A. Massalongo, 1852
- Genus Magnussoniomyces Ciferri & Tomaselli, 1953 accepted as Polyblastia A. Massalongo, 1852
- Genus Melanotheca Fée, 1837 accepted as Thelidium A. Massalongo, 1855
- Genus Merismatium Zopf, 1898
- Genus Muellerella Hepp, 1862
- Genus Muellerellomyces Ciferri & Tomaselli, 1953 accepted as Muellerella Hepp, 1862
- Genus Mullerella Hepp, 1862 accepted as Muellerella Hepp, 1862
- Genus Müllerella Hepp, 1862 accepted as Muellerella Hepp, 1862
- Genus Mycopyrenula Vainio, 1921 accepted as Thelidium A. Massalongo, 1855
- Genus Neocatapyrenium H. Harada, 1993
- Genus Normandina Nylander, 1855
- Genus Normandinomyces Ciferri & Tomaselli, 1953 accepted as Normandina Nylander, 1855
- Genus Oevstedalia Ertz & Diederich, 2004
- Genus Papulare Tomaselli & Ciferri, 1952 accepted as Thelidium A. Massalongo, 1855
- Genus Papulariomyces Ciferri & Tomaselli, 1953 accepted as Thelidium A. Massalongo, 1855
- Genus Parabagliettoa C. Gueidan & C. Roux, 2009
- Genus Paracarpidium J. Müller Arg., 1883 accepted as Endocarpon J. Hedwig, 1789
- Genus Paraphysothele Zschacke, 1934 accepted as Thelidium A. Massalongo, 1855
- Genus Paraplacidiopsis Servít, 1953 accepted as Placidiopsis Beltramini, 1858
- Genus Paraspheconisca (F.E.T. Bachmann) A. Zahlbruckner, 1931
- Genus Parathelium Nylander, 1862 accepted as Thelidium A. Massalongo, 1855
- Genus Parmentaria Fée, 1824 accepted as Thelidium A. Massalongo, 1855
- Genus Parmentariomyces Ciferri & Tomaselli, 1953 accepted as Thelidium A. Massalongo, 1855
- Genus Parmentieria Trevisan, 1860 accepted as Thelidium A. Massalongo, 1855
- Genus Phaeocyrtis Vainio, 1921 accepted as Merismatium Zopf, 1898
- Genus Phaeomeris Clements, 1909 accepted as Spheconisca (Norman) Norman, 1876
- Genus Phaeospora Hepp ex B. Stein in F. Cohn, 1879
- Genus Pharcidiella (P.A. Saccardo) F.E. Clements & C.L. Shear, 1931 accepted as Phaeospora Hepp ex B. Stein in F. Cohn, 1879
- Genus Phillippiregis Ciferri & Tomaselli, 1953 accepted as Polyblastia A. Massalongo, 1852
- Genus Phragmothele Clements, 1909 accepted as Thelidium A. Massalongo, 1855
- Species Phragmothele papularis (Fr.) Clem., 1909 accepted as Thelidium papulare (Fr.) Arnold, 1885
- Genus Placidiopsis Beltramini, 1858
- Genus Placidium A. Massalongo, 1855
- Genus Placocarpus Trevisan, 1860
- Genus Placopyrenium O. Breuss in P.L. Nimis & J. Poelt, 1987
- Genus Placotheliomyces Ciferri & Tomaselli, 1953 accepted as Placothelium J. Müller Arg., 1893
- Genus Placothelium J. Müller Arg., 1893
- Genus Pleamphisphaeria von Höhnel, 1919 accepted as Thelidium A. Massalongo, 1855
- Genus Pleophalis F.E. Clements, 1909 accepted as Spheconisca (Norman) Norman, 1876
- Genus Pleothelis M. Choisy, 1949 accepted as Muellerella Hepp, 1862
- Genus Pleurotheliopsis A. Zahlbruckner, 1922 accepted as Thelidium A. Massalongo, 1855
- Genus Pleurothelium J. Müller Arg., 1885 accepted as Thelidium A. Massalongo, 1855
- Genus Polyblastia A. Massalongo, 1852
- Genus Polyblastidea (Zschacke) Tomaselli & Ciferri, 1952 accepted as Polyblastia A. Massalongo, 1852
- Genus Polyblastiomyces Ciferri & Tomaselli, 1953 accepted as Polyblastia A. Massalongo, 1852
- Genus Polycarpella Theissen & H. Sydow, 1918 accepted as Muellerella Hepp, 1862
- Genus Porphyriospora A. Massalongo, 1852 accepted as Polyblastia A. Massalongo, 1852
- Genus Protobagliettoa Servít, 1955 accepted as Verrucaria H.A. Schrader, 1794
- Genus Psoroglaena J. Müller Arg., 1891
- Genus Psoroglaenomyces Ciferri & Tomaselli, 1953 accepted as Psoroglaena J. Müller Arg., 1891
- Genus Pyrenastromyces Ciferri & Tomaselli, 1953 accepted as Thelidium A. Massalongo, 1855
- Genus Pyreniococcus J.A. Wheldon & A. Wilson, 1915 accepted as Phaeospora Hepp ex B. Stein in F. Cohn, 1879
- Genus Pyrenophoromyces Ciferri & Tomaselli, 1953 accepted as Thelidium A. Massalongo, 1855
- Genus Pyrenophorum Tomaselli & Ciferri, 1952 accepted as Thelidium A. Massalongo, 1855
- Genus Pyrenothamnia Tuckerman, 1883 accepted as Endocarpon J. Hedwig, 1789
- Genus Pyrenothamniomyces Ciferri & Tomaselli, 1953 accepted as Endocarpon J. Hedwig, 1789
- Genus Pyrenula Acharius, 1809 accepted as Thelidium A. Massalongo, 1855
- Genus Pyrenulella Fink, 1935 accepted as Phaeospora Hepp ex B. Stein in F. Cohn, 1879
- Genus Raesaeneniolichen Tomaselli & Ciferri, 1952 accepted as Polyblastia A. Massalongo, 1852
- Genus Raesaeneniomyces Ciferri & Tomaselli, 1953 accepted as Polyblastia A. Massalongo, 1852
- Genus Rhabdopsora J. Müller Arg., 1888
- Genus Rhabdopsoromyces Ciferri & Tomaselli, 1953 accepted as Rhabdopsora J. Müller Arg., 1888
- Genus Rhodocarpon Lönnroth, 1858 accepted as Endocarpon J. Hedwig, 1789
- Genus Sarcoexcipula J. Etayo, 2008
- Genus Sarcopyrenia Nylander, 1858
- Genus Sarcopyreniomyces Ciferri & Tomaselli, 1953 accepted as Sarcopyrenia Nylander, 1858
- Genus Sarcopyreniopsis Ciferri & Tomaselli, 1953 accepted as Sarcopyrenia Nylander, 1858
- Genus Scleropyrenium H. Harada, 1993
- Genus Servitia M.S. Christiansen & Alstrup, 2001
- Genus Sphecomiscomyces Ciferri & Tomaselli, 1953
- Genus Spheconisca (Norman) Norman, 1876
- Genus Spheconiscomyces Ciferri & Tomaselli, 1953 accepted as Spheconisca (Norman) Norman, 1876
- Genus Sporodictyon A. Massalongo, 1852 accepted as Polyblastia A. Massalongo, 1852
- Genus Sporophysa (P.A. Saccardo) Vainio, 1921 accepted as Verrucaria H.A. Schrader, 1794
- Genus Starbaeckiella (P.A. Saccardo & P. Sydow) H. Sydow & P. Sydow, 1919 accepted as Thelidium A. Massalongo, 1855
- Genus Sychnogonia Körber, 1855 accepted as Muellerella Hepp, 1862
- Genus Telogalla Nik. Hoffmann & Hafellner, 2000
- Genus Thelidiola C.W. Dodge, 1968 accepted as Muellerella Hepp, 1862
- Genus Thelidiomyces Ciferri & Tomaselli, 1953 accepted as Thelidium A. Massalongo, 1855
- Genus Thelidiopsis Vainio, 1921
- Genus Thelidium A. Massalongo, 1855
- Genus Tichothecium Flotow, 1850 accepted as Verrucaria H.A. Schrader, 1794
- Genus Titanella H. Sydow & P. Sydow, 1919 accepted as Thelidium A. Massalongo, 1855
- Genus Trimmatothele Norman ex A. Zahlbruckner in Engler & Prantl, 1903
- Genus Verrucaria H.A. Schrader, 1794
- Genus Verrucariomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Verrucaria H.A. Schrader, 1794
- Genus Verrucula J. Steiner, 1896 accepted as Verrucaria H.A. Schrader, 1794
- Genus Verruculopsis Gueidan, Navarro-Rosinés & Cl. Roux, 2007
- Genus Wahlenbergiella C. Gueidan & H. Thüs, 2009
- Genus Zschackea M. Choisy & R.G. Werner, 1932 accepted as Verrucaria H.A. Schrader, 1794
- Family Verrucariales incertae sedis
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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