Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Order Amphisphaeriales
- Order Annulatascales
- Order Boliniales
- Order Calosphaeriales
- Order Cancellidiales
- Order Chaetosphaeriales
- Family Chaetosphaeriaceae Réblová, M.E. Barr & Samuels, 1999
- Family Chaetosphaeriales incertae sedis
- Family Helminthosphaeriaceae Samuela, Candoussau & Magni, 1997
- Genus Ceratosporium Schweinitz, 1832
- Genus Echinosphaeria A.N. Miller & Huhndorf, 2004
- Genus Helminthosphaeria Fuckel, 1870
- Genus Hilberina Huhndorf & A.N. Miller, 2004
- Genus Litschaueria Petrak, 1923 accepted as Helminthosphaeria Fuckel, 1870
- Genus Oramasia Urries, 1956 accepted as Vermiculariopsiella H.B. Bender, 1932
- Genus Ruzenia O. Hilber ex A.N. Miller & Huhndorf, 2004 accepted as Ruzenia O. Hilber in Hilber & Hilber, 2002
- Genus Ruzenia O. Hilber in Hilber & Hilber, 2002
- Genus Singera A.C. Batista & J. Bezerra in A.C. Batista et al., 1960 accepted as Vermiculariopsiella H.B. Bender, 1932
- Genus Spadicoides S.J. Hughes, 1958
- Species Spadicoides aspera (Piroz.) C.J.K. Wang & B. Sutton, 1982 accepted as Diplococcium asperum Piroz., 1972
- Species Spadicoides atra (Corda) S. Hughes, 1958
- Species Spadicoides bina (Corda) S. Hughes, 1958
- Species Spadicoides clavariarum (Desm.) S. Hughes, 1958 accepted as Helminthosphaeria clavariarum (Desm.) Fuckel, 1870
- Species Spadicoides grovei M.B. Ellis, 1963
- Species Spadicoides obovata (Cooke & Ellis) S. Hughes, 1958
- Species Spadicoides ramosa Rambelli ined.
- Species Spadicoides stoveri M.B. Ellis, 1972
- Species Spadicoides verrucosa V. Rao & de Hoog, 1986
- Species Spadicoides xylogena (A.L. Sm.) S. Hughes, 1958
- Genus Vermiculariopsiella H.B. Bender, 1932
- Genus Vermiculariopsis F. von Höhnel, 1918 accepted as Vermiculariopsiella H.B. Bender, 1932
- Family Pseudocapsulosporaceae S.N. Zhang, E.B.G. Jones & K.D. Hyde, 2024
- Order Coniochaetales
- Order Coronophorales
- Order Diaporthales
- Order Hypocreales
- Order Hypocreomycetidae incertae sedis
- Order Jobellisiales
- Order Lulworthiales
- Order Melanosporales
- Order Microascales
- Order Ophiostomatales
- Order Phomatosporales
- Order Phyllachorales
- Order Pisorisporiales
- Order Sordariales
- Order Sordariomycetes incertae sedis
- Order Sordariomycetidae incertae sedis
- Order Tirisporellales
- Order Trichosphaeriales
- Order Xylariales
- Order Xylariomycetidae incertae sedis
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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