Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Order Arachnomycetales
- Order Ascosphaerales
- Order Chaetothyriales
- Order Chaetothyriomycetidae incertae sedis
- Order Coryneliales
- Order Eurotiales
- Family Aspergillaceae
- Genus Acmosporium Corda, 1839 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Alliospora Pim, 1883 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Aspergilloides Dierckx, 1901 accepted as Penicillium Link, 1809
- Genus Aspergillopsis Spegazzini, 1910 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Aspergillus P. Micheli ex Haller, 1768
- Genus Aspergillus E.M. Fries, 1832 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Basidiella M.C. Cooke, 1878 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Bovetia S. Onofri & A.M. Persiani in A.M. Persiani & S. Onofri, 1982
- Genus Briarea Corda in J. Sturm, 1831 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Byssochlamys R. Westling, 1909
- Genus Capsulotheca O.P. Kamyschko, 1960
- Genus Carpenteles Langeron, 1922 accepted as Eupenicillium F. Ludwig, 1892
- Genus Chaetosartorya C.V. Subramanian, 1972
- Genus Chaetotheca H. Zukal, 1890
- Genus Chromocleista T. Yaguchi & S. Udagawa in T. Yaguchi et al., 1993
- Genus Citromyces Wehmer, 1893 accepted as Penicillium Link, 1809
- Genus Cladaspergillus Ritgen, 1831 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Cladosarum E. Yuill & J.L. Yuill, 1938 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Cleistosoma Harkness, 1884 accepted as Emericella M.J. Berkeley, 1857
- Genus Clistosoma Clements & Shear, 1931 accepted as Emericella M.J. Berkeley, 1857
- Genus Coonemeria J. Mouchacca, 1997
- Genus Coremium Link, 1809 accepted as Penicillium Link, 1809
- Genus Corollium O. Sopp, 1912 accepted as Paecilomyces Bainier, 1907
- Genus Cristaspora F. Fort & J. Guarro, 1984
- Genus Dactylomyces Sopp, 1912
- Genus Dendrosphaera Patouillard, 1907
- Genus Dichlaena Durieu & Montagne, 1849
- Genus Dichotomomyces Saito ex D.B. Scott, 1970
- Genus Diplostephanus Langeron, 1922 accepted as Emericella M.J. Berkeley, 1857
- Genus Edyuillia C.V. Subramanian, 1972
- Genus Eladia G. Smith, 1961
- Genus Emericella M.J. Berkeley, 1857
- Genus Erythrogymnotheca T. Yaguchi & S. Udagawa in T. Yaguchi, A. Someya & S. Udagawa, 1994 accepted as Talaromyces C.R. Benjamin, 1955
- Genus Euaspergillus F. Ludwig, 1892 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Eupenicillium F. Ludwig, 1892
- Genus Eurotium Link, 1809
- Genus Fennellia B.J. Wiley & E.G. Simmons, 1973
- Genus Floccaria Greville, 1827 accepted as Penicillium Link, 1809
- Genus Graphidium Lindau, 1909 accepted as Paecilomyces Bainier, 1907
- Genus Gutturomyces Rivolta, 1884 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Gymnoeurotium D.W. Malloch & R.F. Cain, 1973 accepted as Edyuillia C.V. Subramanian, 1972
- Genus Hamigera A.C. Stolk & R.A. Samson, 1971
- Genus Harpezomyces D.W. Malloch & R.F. Cain, 1973 accepted as Chaetosartorya C.V. Subramanian, 1972
- Genus Hemicarpenteles A.K. Sarbhoy & J.J. Elphick, 1968
- Genus Hemisartorya J.N. Rai & H.J. Chowdhery, 1976? accepted as Neosartorya D.W. Malloch & R.F. Cain, 1973
- Genus Inzengaea Borzí, 1885 accepted as Emericella M.J. Berkeley, 1857
- Genus Leiothecium R.A. Samson & J. Mouchacca, 1975
- Genus Merimbla J.I. Pitt in J.I. Pitt & A.D. Hocking, 1979 accepted as Hamigera A.C. Stolk & R.A. Samson, 1971
- Genus Moniliger Letellier accepted as Penicillium Link, 1809
- Genus Neocarpenteles S. Udagawa & S. Uchiyama, 2002
- Genus Neopetromyces J.C. Frisvad & R.A. Samson, 2000
- Genus Neosartorya D.W. Malloch & R.F. Cain, 1973
- Genus Otomyces Wreden, 1874 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Paecilomyces Bainier, 1907
- Genus Paratalaromyces Matsushima, 2003
- Genus Penicilliopsis Solms, 1887
- Genus Penicillium Link, 1809
- Genus Petromyces D.W. Malloch & R.F. Cain, 1973
- Genus Phialomyces P.C. Misra & P.H.B. Talbot, 1964
- Genus Phialosimplex L. Sigler, D.A. Sutton, C.F.C. Gibas, R.C. Summerbell & P.C. Iwen, 2010 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Polypaecilum G. Smith, 1961 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Pritzeliella P.C. Hennings, 1903 accepted as Penicillium Link, 1809
- Genus Pseudocordyceps Hauman, 1936
- Genus Pyrobolus O. Kuntze, 1891 accepted as Eurotium Link, 1809
- Genus Raperia C.V. Subramanian & C. Rajendran, 1976? accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Rasamsonia J. Houbraken & J.C. Frisvad, 2011
- Genus Redaellia Ciferri, 1930 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Rhodocephalus Corda, 1837 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Rhopalocystis W.B. Grove, 1911 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Royella R.S. Dwivedi, 1960 accepted as Dichotomomyces Saito ex D.B. Scott, 1970
- Genus Sagenoma A.C. Stolk & G.F. Orr, 1974 accepted as Talaromyces C.R. Benjamin, 1955
- Genus Sagenomella W. Gams, 1978
- Species Sagenomella alba W. Gams & B.E. Söderstr., 1978
- Species Sagenomella bohemica Fassat. & Pecková, 1990
- Species Sagenomella diversispora (J.F.H. Beyma) W. Gams, 1978
- Species Sagenomella griseoviridis (Onions & G.L. Barron) W. Gams, 1978
- Species Sagenomella humicola (Onions & G.L. Barron) W. Gams, 1978
- Species Sagenomella oligospora W. Gams & Luiten, 1978
- Species Sagenomella ryukyuensis S. Ueda & Udagawa, 1984 accepted as Sagenoma ryukyuense S. Ueda & Udagawa, 1984
- Species Sagenomella sagenomatis (Stolk & G.F. Orr) W. Gams, 1978
- Species Sagenomella sclerotialis W. Gams & Breton, 1978
- Species Sagenomella striatispora (Onions & G.L. Barron) W. Gams, 1978
- Species Sagenomella verticillata W. Gams & B.E. Söderstr., 1978
- Genus Sagonema Stolk & Orr, 1974
- Genus Saitoa C. Rajendran & B.N. Muthappa, 1980 accepted as Neosartorya D.W. Malloch & R.F. Cain, 1973
- Genus Sarophorum H. Sydow & P. Sydow, 1916 accepted as Penicilliopsis Solms, 1887
- Genus Sceptromyces Corda in J. Sturm, 1831 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Sclerocleista C.V. Subramanian, 1972
- Genus Sorophorum H. Sydow & P. Sydow, 1917 accepted as Penicilliopsis Solms, 1887
- Genus Sphaeromyces Montagne, 1845
- Genus Spicariopsis R. Heim, 1939 accepted as Paecilomyces Bainier, 1907
- Genus Sporophormis D.W. Malloch & R.F. Cain, 1973 accepted as Warcupiella C.V. Subramanian, 1972
- Genus Sterigmatocystis C.E. Cramer, 1859
- Genus Stilbodendron H. Sydow & P. Sydow, 1916
- Genus Stilbothamnium P.C. Hennings, 1896 accepted as Aspergillus P. Micheli ex Haller, 1768
- Genus Syncleistostroma C.V. Subramanian, 1972 accepted as Petromyces D.W. Malloch & R.F. Cain, 1973
- Genus Talaromyces C.R. Benjamin, 1955
- Genus Theclospora H.W. Harkness, 1884 accepted as Emericella M.J. Berkeley, 1857
- Genus Thysanophora W.B. Kendrick, 1961
- Genus Torulomyces Delitsch in Lembke & Delitsch, 1943
- Genus Trichocoma Junghuhn, 1838
- Genus Trichoskytale Corda, 1842 accepted as Trichocoma Junghuhn, 1838
- Genus Walzia Sorokin, 1871 accepted as Penicillium Link, 1809
- Genus Warcupiella C.V. Subramanian, 1972
- Genus Xerochrysium J.I. Pitt in Pitt et al., 2013
- Family Dendrosphaeraceae accepted as Trichocomaceae
- Family Elaphomycetaceae
- Family Eurotiaceae accepted as Aspergillaceae
- Family Eurotiales incertae sedis
- Family Monascaceae
- Family Thermoascaceae
- Family Trichocomaceae accepted as Aspergillaceae
- Order Eurotiomycetes incertae sedis
- Order Eurotiomycetidae incertae sedis
- Order Mycocaliciales
- Order Onygenales
- Order Pyrenolales accepted as Pyrenulales
- Order Pyrenulales
- Order Verrucariales
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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