Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Order Amphisphaeriales
- Order Annulatascales
- Order Boliniales
- Order Calosphaeriales
- Order Cancellidiales
- Order Chaetosphaeriales
- Order Coniochaetales
- Order Coronophorales
- Order Diaporthales
- Order Hypocreales
- Family Bionectriaceae
- Family Clavicipitaceae (Lindau) Earle, 1901
- Family Cordycipitaceae Kreisel ex G.H. Sung, J.M. Sung, Hywel-Jones & Spatafora, 2007
- Genus Akrophyton Lebert, 1858 accepted as Cordyceps E.M. Fries, 1824
- Genus Alphitomyces Reissek, 1856 accepted as Isaria Persoon, 1794
- Genus Amphichorda E.M. Fries, 1825 accepted as Isaria Persoon, 1794
- Genus Ascopolyporus A. Møller, 1901
- Genus Beauveria Vuillemin, 1912
- Genus Beejasamuha C.V. Subramanian & K.V. Chandrashekara, 1977
- Genus Blistum B.C. Sutton, 1973 accepted as Polycephalomyces Y. Kobayasi, 1941
- Species Blistum orbiculare (Berk. & Broome) Ing, 1976 accepted as Stilbella byssiseda (Pers.) Seifert, 1985
- Species Blistum ovalisporum (A.L. Sm.) B. Sutton, 1973 accepted as Byssostilbe stilbigera (Berk. & Broome) Petch, 1912
- Species Blistum tomentosum (Schrad.) B. Sutton, 1973 accepted as Polycephalomyces tomentosus (Schrad.) Seifert, 1985
- Genus Campylothecium Cesati, 1846 accepted as Cordyceps E.M. Fries, 1824
- Genus Chaunopycnis W. Gams, 1979
- Genus Cordycepioideus Stifler, 1941
- Genus Cordyceps E.M. Fries, 1824
- Genus Cordylia E.M. Fries, 1818 accepted as Cordyceps E.M. Fries, 1824
- Genus Cordyliceps E.M. Fries, 1832 accepted as Cordyceps E.M. Fries, 1824
- Genus Coremiopsis Sizova & Suprun, 1957 accepted as Isaria Persoon, 1794
- Genus Corynesphaera Dumortier, 1822 accepted as Cordyceps E.M. Fries, 1824
- Genus Didymobotryopsis Hennings, 1902 accepted as Hirsutella Patouillard, 1892
- Genus Didymobotrys F.E. Clements & Shear, 1931 accepted as Hirsutella Patouillard, 1892
- Genus Elaphocordyceps G.H. Sung & Spatafora, 2007
- Genus Engyodontium G.S. de Hoog, 1978
- Genus Flavocillium H. Yu, Y.-B. Wang, Y. Wang, Q. Fan & Z.L. Yang in Wang et al., 2020
- Genus Gamszarea Z.-F. Zhang & L. Cai in Zhang et al., 2020
- Genus Gibellula Cavara, 1894
- Genus Granulomanus G.S. de Hoog & R.A. Samson, 1978
- Genus Haptocillium W. Gams & Zare, 2001
- Genus Hirsutella Patouillard, 1892
- Genus Hymenostilbe Petch, 1931
- Genus Hyperdermium J.F. White, R. Sullivan, Bills & Hywel-Jones, 2000
- Genus Hypoxylum A.L. Jussieu, 1789 accepted as Cordyceps E.M. Fries, 1824
- Genus Isaria Persoon, 1794
- Genus Lecanicillium W. Gams & Zare, 2001
- Genus Liangia H. Yu, Y.-B. Wang, Y. Wang, Z.-H. Chen & Z.L. Yang in Wang et al., 2020
- Genus Mahevia J. Lagarde, 1917 accepted as Hirsutella Patouillard, 1892
- Genus Microhilum H.-Y. Yip & A.C. Rath, 1989
- Genus Mitrasphaera Dumortier, 1822 accepted as Cordyceps E.M. Fries, 1824
- Genus Neocordyceps Y. Kobayasi, 1984
- Genus Neogamszarella W.H. Chen, Y.F. Han & J.D. Liang, 2025
- Genus Ophiocordyceps Petch, 1931 accepted as Cordyceps E.M. Fries, 1824
- Genus Paraisaria R.A. Samson & B.L. Brady, 1983
- Genus Phytocordyceps C.H. Su & H.H. Wang, 1986 accepted as Cordyceps E.M. Fries, 1824
- Genus Polistophthora Lebert, 1858 accepted as Cordyceps E.M. Fries, 1824
- Genus Pseudogibellula R.A. Samson & H.C. Evans, 1973
- Genus Purpureocillium J. Luangsa-Ard, N.L. Hywel-Jones & R.A. Samson, 2011
- Genus Racemella Cesati, 1861 accepted as Cordyceps E.M. Fries, 1824
- Genus Rotiferophthora G.L. Barron, 1991
- Genus Syngliocladium T. Petch, 1932
- Genus Synnematium Speare, 1920 accepted as Hirsutella Patouillard, 1892
- Genus Synsterigmatocystis Costantin, 1888 accepted as Gibellula Cavara, 1894
- Genus Tettigorhyza G. Bertoloni, 1875 accepted as Cordyceps E.M. Fries, 1824
- Genus Tolypocladium W. Gams, 1971
- Genus Torrubia Léveillé in Cesati & De Notaris, 1863 accepted as Cordyceps E.M. Fries, 1824
- Genus Torrubiella Boudier, 1885
- Genus Trichosterigma Petch, 1923 accepted as Hirsutella Patouillard, 1892
- Genus Troglobiomyces G. Pacioni, 1980 accepted as Hirsutella Patouillard, 1892
- Genus Xylaria Hill ex Greville, 1823 accepted as Cordyceps E.M. Fries, 1824
- Family Hypocreaceae
- Family Hypocreales incertae sedis
- Family Nectriaceae
- Family Niessliaceae
- Family Ophiocordycipitaceae G.H. Sung, J.M. Sung, Hywel-Jones & Spatafora, 2007 accepted as Cordycipitaceae Kreisel ex G.H. Sung, J.M. Sung, Hywel-Jones & Spatafora, 2007
- Family Polycephalomycetaceae Y.P. Xiao, Y.B. Wang, T.C. Wen, H. Yu & K.D. Hyde, 2023
- Family Stilbellaceae accepted as Hypocreales incertae sedis
- Family Tuberculariaceae accepted as Nectriaceae
- Order Hypocreomycetidae incertae sedis
- Order Jobellisiales
- Order Lulworthiales
- Order Melanosporales
- Order Microascales
- Order Ophiostomatales
- Order Phomatosporales
- Order Phyllachorales
- Order Pisorisporiales
- Order Sordariales
- Order Sordariomycetes incertae sedis
- Order Sordariomycetidae incertae sedis
- Order Tirisporellales
- Order Trichosphaeriales
- Order Xylariales
- Order Xylariomycetidae incertae sedis
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Sanchytriomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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