Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Order Acarosporales
- Order Agyriales
- Order Baeomycetales
- Order Candelariales
- Order Lecanorales
- Order Lecanoromycetes incertae sedis
- Order Lecanoromycetidae incertae sedis
- Order Lecideales
- Order Ostropales
- Family Asterothyriaceae
- Family Coenogoniaceae
- Family Gomphillaceae
- Family Graphidaceae
- Genus Acanthographina (Vainio) W. Watson, 1929 accepted as Acanthothecis Clements, 1909
- Genus Acanthographis (Vainio) W. Watson, 1929 accepted as Acanthothecis Clements, 1909
- Genus Acanthotheciopsis A. Zahlbruckner, 1923 accepted as Acanthothecis Clements, 1909
- Genus Acanthothecis Clements, 1909
- Genus Acanthothecium Vainio, 1890 accepted as Acanthothecis Clements, 1909
- Genus Acanthothecomyces Ciferri & Tomaselli, 1953 accepted as Acanthothecis Clements, 1909
- Genus Acanthotrema A. Frisch, 2006
- Genus Actinoglyphis Montagne, 1856 accepted as Sarcographa Fée, 1824
- Genus Allographa F.F. Chevallier, 1824 accepted as Graphina J. Müller Arg., 1880
- Genus Amazonotrema K. Kalb & R. Lücking, 2009
- Genus Ampliotrema Kalb, 2004 accepted as Ampliotrema Kalb ex Kalb, 2006
- Genus Ampliotrema Kalb ex Kalb, 2006
- Genus Anomalographis K. Kalb in K. Kalb & J. Hafellner, 1992
- Genus Anomomorpha Nylander ex Hue, 1891 accepted as Graphis Adanson, 1763
- Genus Antrocarpon A. Massalongo, 1856 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Ascidium Fée, 1824 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Asterisca G.F.W. Meyer, 1825 accepted as Sarcographa Fée, 1824
- Genus Asteristion Leighton, 1870 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Asteristium Clements, 1909 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Astrochapsa S. Parnmen, R. Lücking & H.T. Lumbsch, 2012
- Genus Aulacographa W.A. Leighton, 1854 accepted as Graphis Adanson, 1763
- Genus Carbacanthographis Staiger & Kalb, 2002
- Genus Chapsa A. Massalongo, 1860 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Chiographa W.A. Leighton, 1854 accepted as Phaeographis J. Müller Arg., 1882
- Genus Clandestinotrema E. Rivas Plata, R. Lücking & H.T. Lumbsch, 2012
- Genus Compositrema E. Rivas Plata, R. Lücking & H.T. Lumbsch, 2012
- Genus Coniochila A. Massalongo, 1860 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Creographa A. Massalongo, 1860 accepted as Phaeographis J. Müller Arg., 1882
- Genus Cruentotrema E. Rivas Plata, K. Papong, H.T. Lumbsch & R. Lücking, 2012
- Genus Crutarndina S. Parnmen, R. Lücking & H.T. Lumbsch, 2012
- Genus Ctesium Persoon in Gaudichaud-Beaupré in Freycinet, 1827 accepted as Graphis Adanson, 1763
- Genus Cyclographina D.D. Awasthi in D.D. Awasthi & M. Joshi, 1979
- Genus Diaphorographis A.W. Archer & K. Kalb, 2009
- Genus Digraphis Clements, 1909 accepted as Graphis Adanson, 1763
- Genus Diorygma Eschweiler, 1824 accepted as Graphina J. Müller Arg., 1880
- Genus Diplographis Krempelhuber ex A. Massalongo, 1860 accepted as Graphis Adanson, 1763
- Genus Diplolabia A. Massalongo, 1854 accepted as Graphis Adanson, 1763
- Genus Dyplolabia A. Massalongo, 1854 accepted as Graphis Adanson, 1763
- Genus Ectographis Trevisan, 1853 accepted as Phaeographis J. Müller Arg., 1882
- Genus Ectolechia A. Massalongo, 1853 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Emblemia Persoon in Gaudichaud-Beaupré in Freycinet, 1827 accepted as Phaeographina J. Müller Arg., 1882
- Genus Enigmotrema R. Lücking in Sipman, Lücking, Aptroot, Chaves, Kalb & Umaña Tenorio, 2012
- Genus Fissurina Fée, 1824 accepted as Graphis Adanson, 1763
- Genus Flegographa A. Massalongo, 1860 accepted as Phaeographis J. Müller Arg., 1882
- Genus Glaucinaria Fée ex A. Massalongo, 1860 accepted as Graphina J. Müller Arg., 1880
- Genus Glaucotrema E. Rivas Plata & H.T. Lumbsch in Rivas Plata, Lücking & Lumbsch, 2012
- Genus Glyphis Acharius, 1814
- Genus Glyphomyces Ciferri & Tomaselli, 1953 accepted as Glyphis Acharius, 1814
- Genus Graphidomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Graphis Adanson, 1763
- Genus Graphina J. Müller Arg., 1880
- Genus Graphinomyces Ciferri & Tomaselli, 1953 accepted as Graphina J. Müller Arg., 1880
- Genus Graphis Adanson, 1763
- Genus Graphydomyces Thomas ex Ciferri & Tomaselli, 1953
- Genus Gymnographa J. Müller Arg., 1887 accepted as Phaeographis J. Müller Arg., 1882
- Genus Gymnographomyces Ciferri & Tomaselli, 1953 accepted as Phaeographis J. Müller Arg., 1882
- Genus Gymnographopsis C.W. Dodge, 1967
- Genus Gymnotrema Nylander, 1858 accepted as Glyphis Acharius, 1814
- Genus Gyrostomomyces Ciferri & Tomaselli, 1953 accepted as Gyrostomum E.M. Fries, 1825
- Genus Gyrostomum E.M. Fries, 1825
- Genus Gyrotrema A. Frisch, 2006
- Genus Halegrapha E. Rivas Plata & R. Lücking, 2011
- Genus Heiomasia M.P. Nelsen, R. Lücking & E. Rivas Plata, 2010
- Genus Helminthocarpon Fée, 1837
- Genus Helminthocarponomyces Ciferri & Tomaselli, 1953 accepted as Helminthocarpon Fée, 1837
- Genus Hemithecium Trevisan, 1853 accepted as Graphina J. Müller Arg., 1880
- Genus Hymenodecton W.A. Leighton, 1854 accepted as Phaeographis J. Müller Arg., 1882
- Genus Kalbographa Lücking, 2007
- Genus Lecanactis Eschweiler, 1824 accepted as Phaeographis J. Müller Arg., 1882
- Genus Leiogramma Eschweiler in Martius, 1833 accepted as Phaeographis J. Müller Arg., 1882
- Genus Leiorreuma Eschweiler, 1824 accepted as Phaeographis J. Müller Arg., 1882
- Genus Leptotrema Montagne & R.B. van den Bosch in Miquel, 1855-1857(?) accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Leucogramma G.F.W. Meyer, 1825 accepted as Graphina J. Müller Arg., 1880
- Genus Leucogramma A. Massalongo, 1860 accepted as Graphina J. Müller Arg., 1880
- Genus Macropyrenium Hampe ex A. Massalongo, 1860
- Genus Malmographina M. Cáceres, E. Rivas Plata & R. Lücking, 2012
- Genus Mangoldia R. Lücking, S. Parnmen & H.T. Lumbsch, 2012
- Genus Medusula Eschweiler, 1824 accepted as Sarcographa Fée, 1824
- Genus Medusulina J. Müller Arg., 1894
- Genus Megalographa A. Massalongo, 1860 accepted as Phaeographina J. Müller Arg., 1882
- Genus Myriochapsa M.E.S. Cáceres, R. Lücking & H.T. Lumbsch in Parnmen, Cáceres, Lücking & Lumbsch, 2013
- Genus Nitidochapsa S. Parnmen, R. Lücking & H.T. Lumbsch in Parnmen, Cáceres, Lücking & Lumbsch, 2013
- Genus Ocellis Clements, 1909
- Genus Ocellularia G.F.W. Meyer, 1825
- Genus Opegrapha Humboldt, 1793 accepted as Graphis Adanson, 1763
- Genus Oxystoma Eschweiler, 1824 accepted as Graphis Adanson, 1763
- Genus Pallidogramme B. Staiger, K. Kalb & R. Lücking, 2008
- Genus Phaeographidomyces Ciferri & Tomaselli, 1953 accepted as Phaeographis J. Müller Arg., 1882
- Genus Phaeographina J. Müller Arg., 1882
- Genus Phaeographinomyces Ciferri & Tomaselli, 1953 accepted as Phaeographina J. Müller Arg., 1882
- Genus Phaeographis J. Müller Arg., 1882
- Genus Phaeographopsis H.J.M. Sipman in A. Aptroot et al., 1997
- Genus Platygramma G.F.W. Meyer, 1825 accepted as Phaeographis J. Müller Arg., 1882
- Genus Platygramme Fée, 1874
- Genus Platygrapha M.J. Berkeley & Broome, 1873 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Platythecium Staiger, 2002
- Genus Pliariona A. Massalongo, 1860 accepted as Phaeographina J. Müller Arg., 1882
- Genus Porophora G.F.W. Meyer, 1825 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Pseudochapsa S. Parnmen, R. Lücking & H.T. Lumbsch, 2012
- Genus Pseudotopeliopsis S. Parnmen, R. Lücking & H.T. Lumbsch, 2012
- Genus Psorographis Clements, 1909 accepted as Acanthothecis Clements, 1909
- Genus Pycnotrema E. Rivas Plata & R. Lücking, 2012
- Genus Pyrochroa Eschweiler, 1824 accepted as Phaeographis J. Müller Arg., 1882
- Genus Pyrographa Fée ex A. Massalongo, 1860 accepted as Phaeographis J. Müller Arg., 1882
- Genus Redonographa R. Lücking, A. Tehler & H.T. Lumbsch in Lücking, Tehler, Bungartz, Rivas Plata & Lumbsch, 2013
- Genus Rhabdodiscus Vainio, 1921
- Genus Sarcographa Fée, 1824
- Genus Sarcographina J. Müller Arg., 1887
- Species Sarcographina contortuplicata Müll. Arg., 1891
- Species Sarcographina cyclospora Müll. Arg., 1887
- Species Sarcographina farinulenta Zahlbr., 1928
- Species Sarcographina glyphiza (Nyl.) Kr.P. Singh & D.D. Awasthi, 1979
- Species Sarcographina gyrizans (Leight.) Müll. Arg., 1891
- Species Sarcographina maculata Kr.P. Singh & G.P. Sinha, 1994
- Species Sarcographina sandwicensis Zahlbr., 1912
- Genus Sarcographomyces Ciferri & Tomaselli, 1953 accepted as Sarcographa Fée, 1824
- Genus Scaphis Eschweiler, 1824 accepted as Graphis Adanson, 1763
- Genus Schistophoron J. Stirton in T. King et al., 1876
- Genus Schistostoma J. Stirton, 1878
- Genus Solenographa A. Massalongo, 1860 accepted as Graphina J. Müller Arg., 1880
- Genus Stegobolus Montagne, 1845 accepted as Ocellularia G.F.W. Meyer, 1825
- Genus Stenographa W. Mudd, 1861 accepted as Graphina J. Müller Arg., 1880
- Genus Stigmagora Trevisan, 1853
- Genus Thalloloma Trevisan, 1853 accepted as Graphina J. Müller Arg., 1880
- Genus Thecaria Fée, 1824 accepted as Phaeographina J. Müller Arg., 1882
- Genus Thecographa A. Massalongo, 1860 accepted as Phaeographina J. Müller Arg., 1882
- Genus Thelographis Nylander, 1857 accepted as Graphis Adanson, 1763
- Genus Theloschisma Trevisan, 1860 accepted as Phaeographis J. Müller Arg., 1882
- Genus Ustalia E.M. Fries, 1825 accepted as Phaeographis J. Müller Arg., 1882
- Genus Wirthiotrema E. Rivas Plata, K. Kalb, A. Frisch & H.T. Lumbsch, 2010
- Family Gyalectaceae
- Family Myeloconidiaceae
- Family Odontotremataceae
- Family Ostropales incertae sedis
- Family Phlyctidaceae
- Family Porinaceae
- Family Solorinellaceae accepted as Asterothyriaceae
- Family Stictidaceae Fries, 1849
- Family Thelotremataceae
- Family Trichotheliaceae accepted as Porinaceae
- Order Ostropomycetidae incertae sedis
- Order Peltigerales
- Order Pertusariales
- Order Rhizocarpales
- Order Sarrameanales
- Order Teloschistales
- Order Umbilicariales
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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