Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Order Amphisphaeriales
- Order Annulatascales
- Order Boliniales
- Order Calosphaeriales
- Order Cancellidiales
- Order Chaetosphaeriales
- Family Chaetosphaeriaceae Réblová, M.E. Barr & Samuels, 1999
- Genus Aciculadictyochaeta W.P. Wu & Y.Z. Diao, 2022
- Genus Amphitiarospora V. Agnihothrudu, 1963 accepted as Dinemasporium Léveille, 1846
- Genus Anacacumisporium Y.R. Ma & X.G. Zhang in Ma, Xia, Gao, Li & Zhang, 2016
- Genus Anacraspedodidymum C.R. Silva, R.F. Castañeda & Gusmão, 2014
- Genus Aposphaeriella Diedicke, 1912 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Arcuatospora M. Réblová & M. Hernández-Restrepo in Réblová et al., 2021
- Genus Ascochalara M. Réblová, 1999
- Genus Aunstrupia W.P. Wu & Y.Z. Diao, 2022
- Genus Australiasca Sivanesan & Alcorn, 2002
- Genus Bahusutrabeeja C.V. Subramanian & D.J. Bhat, 1977 accepted as Codinaea Maire, 1937
- Species Bahusutrabeeja dwaya Subram. & Bhat, 1977
- Genus Belaina A.C. Batista & E.P. Peres, 1961 accepted as Dinemasporium Léveille, 1846
- Genus Bisporomyces J.F.H. Beyma, 1940 accepted as Chloridium Link, 1809
- Genus Brachydictyochaeta W.P. Wu & Y.Z. Diao, 2022
- Genus Brunneodinemasporium P.W. Crous & R.F. Castañeda in Crous, Verkley, Christensen, Castañeda-Ruíz & Groenewald, 2012
- Genus Cacumisporium Preuss, 1851
- Genus Calceisporiella W.P. Wu & Y.Z. Diao, 2022
- Genus Catenularia Grove, 1886
- Genus Chaetolentomita A. Maublanc, 1915 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Chaetopatella I. Hino & K. Katumoto, 1958 accepted as Pseudolachnea Ranojevic, 1910
- Genus Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Chalarosphaeria W.P. Wu & Y.Z. Diao, 2023
- Genus Chloridium Link, 1809
- Genus Ciliofusa F.E. Clements & Shear, 1931 accepted as Menispora Persoon, 1822
- Genus Ciliofusarium Rostrup, 1892 accepted as Menispora Persoon, 1822
- Genus Cirrhomyces F. von Höhnel, 1903 accepted as Chloridium Link, 1809
- Genus Codinaea Maire, 1937
- Genus Codinaeella M. Réblová & M. Hernández-Restrepo in Réblová et al., 2021
- Genus Codinaeopsis G. Morgan-Jones, 1976 accepted as Codinaea Maire, 1937
- Genus Conicomyces R.C. Sinclair, A. Eicker & G. Morgan-Jones, 1983
- Genus Conisphaeria M.C. Cooke, 1879
- Genus Craspedodidymum Holubová-Jechová, 1972
- Genus Cryptophiale K.A. Pirozynski, 1968
- Genus Cryptophialoidea A.J. Kuthubutheen & A. Nawawi, 1987
- Genus Curvichaeta W.P. Wu & Y.Z. Diao, 2022
- Genus Cylindrotrichum Bonorden, 1851
- Genus Diarimella B.C. Sutton, 1980 accepted as Dinemasporium Léveille, 1846
- Genus Dictyochaeta Spegazzini, 1923
- Genus Dictyochaetopsis A. Arambarri & M.N. Cabello, 1990
- Genus Didymopsamma Petrak, 1925 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Dinemasporiella Bubák & Kabát, 1912 accepted as Pseudolachnea Ranojevic, 1910
- Genus Dinemasporiopsis Bubák & Kabát in Diedicke, 1914 accepted as Pseudolachnea Ranojevic, 1910
- Genus Dinemasporium Léveille, 1846
- Genus Dischloridium B.C. Sutton, 1977
- Genus Ejnerjensenia W.P. Wu & Y.Z. Diao, 2022
- Genus Ellisembia C.V. Subramanian, 1992
- Genus Eriomene (P.A. Saccardo) F.E. Clements & C.L. Shear, 1931 accepted as Menispora Persoon, 1822
- Genus Eriomenella Peyronel, 1918 accepted as Menispora Persoon, 1822
- Genus Erionema Maire, 1906 accepted as Menispora Persoon, 1822
- Genus Eucalyptostroma P.W. Crous & M.J. Wingfield in Crous et al., 2016
- Genus Eucalyptostromiella W.P. Wu & Y.Z. Diao, 2022
- Genus Exserticlava S.J. Hughes, 1978
- Genus Falholtia W.P. Wu & Y.Z. Diao, 2022
- Genus Fuscocatenula M. Réblová & A.N. Miller, 2021
- Genus Fusichloridium W.P. Wu & Y.Z. Diao, 2022
- Genus Gonatotrichum Corda, 1842 accepted as Gonytrichum C.G.D. Nees ex Leman in F. Cuvier, 1821
- Genus Gongromeriza Preuss, 1851 accepted as Chloridium Link, 1809
- Genus Gonytrichum C.G.D. Nees ex Leman in F. Cuvier, 1821 accepted as Chloridium Link, 1809
- Genus Haplochalara Linder, 1933 accepted as Catenularia Grove, 1886
- Genus Hemicorynespora M.B. Ellis, 1972
- Genus Hemisynnema C.V. Subramanian, 1995 accepted as Morrisiella U.N. Saikia & A.K. Sarbhoy, 1985
- Genus Hoehneliella Bresadola & Saccardo, 1902
- Genus Hyalocylindrophora J.L. Crane & K.P. Dumont, 1978 accepted as Dischloridium B.C. Sutton, 1977
- Genus Kionochaeta P.M. Kirk & B.C. Sutton, 1986
- Genus Kionochaetiella W.P. Wu & Y.Z. Diao, 2022
- Genus Klebahnopycnis W. Kirschstein, 1939 accepted as Hoehneliella Bresadola & Saccardo, 1902
- Genus Kylindria F. DiCosmo, S.M. Berch & W.B. Kendrick, 1983
- Genus Kylindrochaeta W.P. Wu & Y.Z. Diao, 2022
- Genus Lecythothecium M. Réblová & K. Winka, 2001
- Genus Lentomita Niessl, 1876 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Linkosia A. Hernández-Gutiérrez & B.C. Sutton, 1997
- Genus Lunatochaeta W.P. Wu & Y.Z. Diao, 2022
- Genus Melanochaeta E. Müller, J. Harr & P. Sulmont, 1969 accepted as Sporoschisma M.J. Berkeley & Broome, 1847
- Genus Melanopsammella F. von Höhnel, 1920 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Melanopsammina F. von Höhnel, 1919 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Menispora Persoon, 1822
- Genus Menisporella V. Agnihothrudu, 1962 accepted as Codinaea Maire, 1937
- Genus Menisporopascus Matsushima, 2003 accepted as Menisporopsis S.J. Hughes, 1952
- Genus Menisporopsis S.J. Hughes, 1952
- Genus Mesobotrys P.A. Saccardo, 1880 accepted as Gonytrichum C.G.D. Nees ex Leman in F. Cuvier, 1821
- Genus Minimidochium B. Sutton, 1970
- Genus Miyoshia Kawamura, 1907 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Miyoshiella Kawamura, 1929 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Monosporoschisma W.P. Wu & Y.Z. Diao, 2022
- Genus Monostachys Arnaud, 1954 accepted as Chloridium Link, 1809
- Genus Montemartinia Curzi, 1927 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Morrisiella U.N. Saikia & A.K. Sarbhoy, 1985
- Genus Multiguttulispora C.G. Lin & J.K. Liu, 2019
- Genus Nawawia L. Marvanová, 1980
- Genus Neopseudolachnella A. Hashimoto & K. Tanaka, 2015
- Genus Neotainosphaeria W.P. Wu & Y.Z. Diao, 2022
- Genus Nimesporella M. Réblová & M. Hernández-Restrepo in Réblová et al., 2021
- Genus Obeliospora A. Nawawi & A.J. Kuthubutheen, 1990 accepted as Paragaeumannomyces Matsushima, 2003
- Genus Oxenbollia W.P. Wu & Y.Z. Diao, 2022
- Genus Parabahusutrabeeja W.P. Wu & Y.Z. Diao, 2022
- Genus Paraceratocladiella W.P. Wu & Y.Z. Diao, 2022
- Genus Paraceratocladium R.F. Castañeda Ruiz, 1987
- Genus Paracodinaea W.P. Wu & Y.Z. Diao, 2022
- Genus Paracryptophiale A.J. Kuthubutheen & A. Nawawi, 1994
- Genus Paragaeumannomyces Matsushima, 2003
- Genus Parasporendocladia W.P. Wu & Y.Z. Diao, 2022
- Genus Phaeodischloridium W.P. Wu & Y.Z. Diao, 2022 accepted as Phaeodischloridium W.P. Wu & Y.Z. Diao, 2023 †
- Genus Phaeodischloridium W.P. Wu & Y.Z. Diao, 2023 †
- Genus Phaeostalagmus W. Gams in W. Gams & V. Holubová-Jechová, 1976
- Genus Phialogeniculata Matsushima in Y. Kobayasi, 1971
- Genus Phialolunulospora Z.F. Yu & R.F. Castañeda, 2020 accepted as Codinaea Maire, 1937
- Genus Phialosporostilbe Mercado & J. Mena, 1985
- Genus Phialoturbella M. Réblová & M. Hernández-Restrepo in Réblová et al., 2021
- Genus Piminella Arnaud, 1954 accepted as Gonytrichum C.G.D. Nees ex Leman in F. Cuvier, 1821
- Genus Pithospermum Montagne ex Berkeley & Broome, 1856 accepted as Sporoschisma M.J. Berkeley & Broome, 1847
- Genus Pseudodinemasporium A. Hashimoto & K. Tanaka, 2015
- Genus Pseudolachnea Ranojevic, 1910
- Genus Pseudolachnella Teng, 1936
- Genus Pseudophialocephala M.S. Calabon, E.B.G. Jones & K.D. Hyde, 2022
- Genus Pseudothozetella W.P. Wu & Y.Z. Diao, 2022
- Genus Psilobotrys P.A. Saccardo, 1879 accepted as Chloridium Link, 1809
- Genus Psiloniella J. Costantin, 1888 accepted as Catenularia Grove, 1886
- Genus Pycnidiochaeta Sousa da Câmara, 1950 accepted as Dinemasporium Léveille, 1846
- Genus Rattania A. Prabhugaonkar & D.J. Bhat, 2009
- Genus Riisgaardia W.P. Wu & Y.Z. Diao, 2022
- Genus Sphaeromycetella G. Arnaud, 1954 accepted as Chloridium Link, 1809
- Genus Sporendocladia G. Arnaud ex T.R. Nag Raj & W.B. Kendrick, 1975
- Genus Sporoschisma M.J. Berkeley & Broome, 1847
- Genus Stanjehughesia C.V. Subramanian, 1992
- Genus Stauronema (Saccardo) Sydow & E.J. Butler in H. Sydow et al., 1916 accepted as Dinemasporium Léveille, 1846
- Genus Stephembruneria R.F. Castañeda, 1988
- Genus Stilbochaeta M. Réblová & M. Hernández-Restrepo in Réblová et al., 2021
- Genus Striatosphaeria G.J. Samuels & E. Müller, 1979
- Genus Tainosphaeria F.A. Fernández & Huhndorf, 2005
- Genus Tainosphaeriella M. Réblová & M. Hernández-Restrepo in Réblová et al., 2021
- Genus Thozetella O. Kuntze, 1891
- Genus Thozetellopsis V. Agnihothrudu, 1958 accepted as Thozetella O. Kuntze, 1891
- Genus Thozetia M.J. Berkeley & F. von Mueller in M.J. Berkeley, 1881 accepted as Thozetella O. Kuntze, 1891
- Genus Trichocollonema F. von Höhnel, 1902 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Umbrinosphaeria M. Réblová, 1999
- Genus Uncigera P.A. Saccardo in P.A. Saccardo & Berlese, 1885
- Genus Urnularia P.A. Karsten, 1866 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Verhulstia M. Hernández-Restrepo in Crous et al., 2017
- Genus Xyladelphia M. Réblová & M. Hernández-Restrepo in Réblová et al., 2021
- Genus Zanclospora S.J. Hughes & Kendrick, 1965
- Genus Zanclosporiella W.P. Wu & Y.Z. Diao, 2022
- Genus Zignoella P.A. Saccardo, 1878 accepted as Chaetosphaeria L.R. Tulasne & C. Tulasne, 1863
- Genus Zignoëlla Saccardo, 1878 represented as Zignoella P.A. Saccardo, 1878
- Family Chaetosphaeriales incertae sedis
- Family Helminthosphaeriaceae Samuela, Candoussau & Magni, 1997
- Family Pseudocapsulosporaceae S.N. Zhang, E.B.G. Jones & K.D. Hyde, 2024
- Order Coniochaetales
- Order Coronophorales
- Order Diaporthales
- Order Hypocreales
- Order Hypocreomycetidae incertae sedis
- Order Jobellisiales
- Order Lulworthiales
- Order Melanosporales
- Order Microascales
- Order Ophiostomatales
- Order Phomatosporales
- Order Phyllachorales
- Order Pisorisporiales
- Order Sordariales
- Order Sordariomycetes incertae sedis
- Order Sordariomycetidae incertae sedis
- Order Tirisporellales
- Order Trichosphaeriales
- Order Xylariales
- Order Xylariomycetidae incertae sedis
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Sanchytriomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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