Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
3 The last expanded taxon is highlighted
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Class Asellariomycetes accepted as Zygomycota incertae sedis
- Class Barbatosporomycetes accepted as Kickxellomycetes
- Class Basidiobolomycetes
- Class Calcarisporiellomycetes accepted as Mucoromycetes
- Class Dimargaritomycetes accepted as Zygomycota incertae sedis
- Class Endogonomycetes
- Class Harpellomycetes accepted as Kickxellomycetes
- Class Kickxellomycetes
- Class Mortierellomycetes
- Class Mucoromycetes
- Order Calcarisporiellales
- Order Mucorales
- Family Chaetocladiaceae accepted as Mucoraceae
- Family Choanephoraceae
- Genus Abradeosporangium A. Subrahmanyam & A.S. Sri, 2010
- Genus Blakeslea Thaxter, 1914
- Species Blakeslea circinans H. Nagan. & N. Kawak., 1955 accepted as Poitrasia circinans (H. Nagan. & N. Kawak.) P.M. Kirk, 1984
- Species Blakeslea monospora B.S. Mehrotra & Baijal, 1968
- Species Blakeslea sinensis R.Y. Zheng & G.Q. Chen, 1987
- Species Blakeslea tandonii M.D. Mehrotra, 1964 accepted as Blakeslea trispora Thaxt., 1914
- Species Blakeslea trispora Thaxt., 1914
- Genus Choanephora Currey, 1873
- Genus Choanephorella Vuillemin, 1904 accepted as Choanephora Currey, 1873
- Genus Choanephoroidea I. Miyake & S. Ito, 1935 accepted as Choanephora Currey, 1873
- Genus Cunninghamia Currey, 1873 accepted as Choanephora Currey, 1873
- Genus Gilbertella Hesseltine, 1960
- Genus Poitrasia P.M. Kirk, 1984
- Family Cunninghamellaceae
- Family Gilbertellaceae accepted as Choanephoraceae
- Family Lentamycetaceae K. Voigt & P.M. Kirk, 2012
- Family Mucoraceae
- Family Mucorales incertae sedis
- Family Mycotyphaceae
- Family Phycomycetaceae
- Family Pilobolaceae
- Family Radiomycetaceae
- Family Saksenaeaceae accepted as Radiomycetaceae
- Family Syncephalastraceae
- Family Thamnidiaceae accepted as Mucoraceae
- Class Ramicandelaberomycetes accepted as Kickxellomycetes
- Class Umbelopsidomycetes
- Class Zoopagomycetes
- Class Zygomycota incertae sedis
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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