Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Class Agaricomycetes
- Order Agaricales
- Family Agaricaceae
- Genus Agaricus Linnaeus, 1753
- Genus Allopsalliota M.M. Nauta & C. Bas in M.M. Nauta, 1999
- Genus Amanita Dillenius ex Boehmer, 1760 accepted as Agaricus Linnaeus, 1753
- Genus Amylolepiota H. Harmaja, 2002
- Genus Annularius Roussel, 1806 accepted as Coprinus Persoon, 1797
- Genus Arachnion Schweinitz, 1822
- Genus Arachniopsis W.H. Long, 1917
- Genus Arachnium accepted as Arachnion Schweinitz, 1822
- Genus Araneosa W.H. Long, 1941
- Genus Artymenium Berkeley ex E. Fischer, 1933 accepted as Secotium G. Kunze, 1840
- Genus Attamyces H. Kreisel, 1972
- Genus Barcheria T. Lebel, 2004
- Genus Batarrea Persoon, 1801
- Genus Battareopsis Hennings, 1902
- Genus Battarraeastrum R. Heim & T. Herrera, 1960 accepted as Battarreoides T. Herrera, 1953
- Genus Battarraeoides
- Genus Battarrea Persoon, 1801
- Genus Battarreoides T. Herrera, 1953
- Genus Bovistaria (E.M. Fries) P.A. Karsten, 1889 accepted as Langermannia Rostkovius in Sturm, 1839
- Genus Bovistina W.H. Long & Stouffer, 1941 accepted as Disciseda Czerniaiev, 1845
- Genus Calbovista Morse ex M.T. Seidl, 1995
- Genus Calvatiella C.H. Chow, 1936 accepted as Bovistella A.P. Morgan, 1892
- Genus Calvatiopsis Hollós, 1929
- Genus Capillaria Velenovský, 1947 accepted as Lycoperdon Persoon, 1801
- Genus Catachyon (Ehrenberg ex E.M. Fries) E.M. Fries, 1832 accepted as Podaxis Desvaux, 1809
- Genus Catastoma A.P. Morgan, 1892 accepted as Disciseda Czerniaiev, 1845
- Genus Cauloglossum Greville, 1823 accepted as Podaxis Desvaux, 1809
- Genus Cerophora Rafinesque, 1808 accepted as Lycoperdon Persoon, 1801
- Genus Chainoderma Massee in M.C. Cooke, 1890 accepted as Podaxis Desvaux, 1809
- Genus Chamaemyces Earle, 1909
- Genus Chitonia (E.M. Fries) P.A. Karsten, 1879 accepted as Clarkeinda O. Kuntze, 1891
- Genus Chitoniella P.C. Hennings in Engler & Prantl, 1898 accepted as Clarkeinda O. Kuntze, 1891
- Genus Chitonis Clements, 1909 accepted as Clarkeinda O. Kuntze, 1891
- Genus Chlamydopus Spegazzini, 1898
- Genus Chlorolepiota A.V. Sathe & S.D. Deshpande, 1979
- Genus Chlorophyllum Massee, 1898
- Genus Chlorosperma Murrill, 1922 accepted as Melanophyllum Velenovský, 1921
- Genus Chlorospora Massee, 1898 accepted as Melanophyllum Velenovský, 1921
- Genus Clarkeinda O. Kuntze, 1891
- Genus Clavogaster Hennings, 1896
- Genus Coccobotrys Boudier & Patouillard, 1900 accepted as Leucoagaricus Locquin ex Singer, 1948
- Genus Constricta R. Heim & L.M. Meléndez-Howell, 1965
- Genus Coprinellus P.A. Karsten, 1879 accepted as Coprinus Persoon, 1797
- Genus Coprinus Persoon, 1797
- Genus Coprinusella (Peck) Zerov, 1979 accepted as Coprinus Persoon, 1797
- Genus Crucibulum Tulasne & C. Tulasne, 1844
- Genus Crucispora E. Horak, 1971
- Genus Cryptolepiota B.R. Kropp & J.M. Trappe in Kropp, Albee-Scott, Castellano & Trappe, 2012
- Genus Cyathia P. Browne, 1756 accepted as Cyathus Haller, 1768
- Genus Cyathodes Haller ex O. Kuntze, 1891
- Genus Cyathodes P. Micheli ex Kuntze, 1891 accepted as Cyathus Haller, 1768
- Genus Cyathus Persoon, 1801
- Genus Cyathus Haller, 1768
- Genus Cystoderma Fayod, 1889
- Genus Cystoderma S. Imai, 1938
- Genus Cystodermella Harmaja, 2002
- Genus Cystolepiota Singer in Singer & Digilio, 1952
- Genus Dendromyces Liboschitz, 1810 accepted as Battarrea Persoon, 1801
- Genus Drosella Maire in Kühner & Maire, 1935 accepted as Chamaemyces Earle, 1909
- Genus Echinoderma (Locquin ex Bon) Bon, 1991 accepted as Lepiota (Persoon) S.F. Gray, 1821
- Genus Endolepiotula Singer, 1963
- Genus Endonevrum Czerniaiev, 1845 accepted as Mycenastrum Desvaux, 1842
- Genus Endoptychum Czerniaiev, 1845
- Genus Enteromyxa Cesati, 1879 accepted as Lycogalopsis E. Fischer, 1886
- Genus Ephemerocybe Fayod, 1869 accepted as Coprinus Persoon, 1797
- Genus Eriosphaera De Toni, 1888 accepted as Langermannia Rostkovius in Sturm, 1839
- Genus Floccularia Pouzar, 1957
- Genus Fungus Adanson ex O. Kuntze, 1898 accepted as Agaricus Linnaeus, 1753
- Genus Fungus de Tournefort ex Adanson, 1763 accepted as Agaricus Linnaeus, 1753
- Genus Fusispora Fayod, 1889 accepted as Lepiota (Persoon) S.F. Gray, 1821
- Genus Gasterellopsis J.B. Routien, 1940
- Genus Glaucospora Rea, 1922 accepted as Melanophyllum Velenovský, 1921
- Genus Granularia Roth, 1791
- Genus Gymnogaster J.W. Cribb, 1956
- Genus Gyrophragmium Montagne, 1843
- Genus Handkea H. Kreisel, 1989 accepted as Lycoperdon Persoon, 1801
- Genus Hebolomatis Earle, 1909
- Genus Heinemannomyces R. Watling, 1999
- Genus Herculea E.M. Fries, 1823 accepted as Podaxis Desvaux, 1809
- Genus Hiatulopsis R. Singer & K. Grinling, 1967
- Genus Hippoperdon C. Montagne in Sagra, 1842 accepted as Calvatia E.M. Fries, 1849
- Genus Horakia F. Oberwinkler, 1976 accepted as Verrucospora E. Horak, 1967
- Genus Hymenagaricus P. Heinemann, 1981
- Genus Hypoblema C.G. Lloyd, 1902 accepted as Calvatia E.M. Fries, 1849
- Genus Hypogaea E. Horak, 1964
- Genus Hypophyllum Paulet, 1808 accepted as Agaricus Linnaeus, 1753
- Genus Janauaria R. Singer, 1986
- Genus Langermannia Rostkovius in Sturm, 1839
- Genus Lanopila E.M. Fries, 1848 accepted as Langermannia Rostkovius in Sturm, 1839
- Genus Lasiosphaera Reichardt, 1870 accepted as Langermannia Rostkovius in Sturm, 1839
- Genus Lentispora Fayod, 1889 accepted as Coprinus Persoon, 1797
- Genus Lepidotus Clements, 1902 accepted as Lepiota (Persoon) S.F. Gray, 1821
- Genus Lepiota (Persoon) S.F. Gray, 1821
- Genus Lepiotella J. Rick, 1938 accepted as Volvolepiota Singer, 1959
- Genus Lepiotella (E.J. Gilbert) Konrad, 1934 accepted as Chamaemyces Earle, 1909
- Genus Lepiotophyllum Locquin, 1942 accepted as Leucocoprinus Patouillard, 1888
- Genus Lepiotula (Maire) Locquin ex E. Horak, 1968 accepted as Lepiota (Persoon) S.F. Gray, 1821
- Genus Leucoagaricus Locquin ex Singer, 1948
- Genus Leucobolbitius (J.E. Lange) Locquin, 1952 accepted as Leucocoprinus Patouillard, 1888
- Genus Leucocoprinus Patouillard, 1888
- Genus Longia Zeller, 1943 accepted as Longula Zeller, 1945
- Genus Longula Zeller, 1945
- Genus Lycogalopsis E. Fischer, 1886
- Genus Macrolepiota R. Singer, 1948
- Genus Mastocephalus O. Kuntze ex F.S. Earle, 1909
- Genus Mastocephalus Battarra ex Kuntze, 1891 accepted as Leucocoprinus Patouillard, 1888
- Genus Melanophyllum Velenovský, 1921
- Genus Metraria M.C. Cooke & Massee in P.A. Saccardo, 1891
- Genus Metrodia J. Raithelhuber, 1971
- Genus Micropsalliota F. von Höhnel, 1914
- Genus Montagnea E.M. Fries, 1836
- Genus Montagnites E.M. Fries, 1838 accepted as Montagnea E.M. Fries, 1836
- Genus Morobia E. Horak, 1979 accepted as Lepiota (Persoon) S.F. Gray, 1821
- Genus Mycenastrum Desvaux, 1842
- Genus Myces Paulet, 1808 accepted as Agaricus Linnaeus, 1753
- Genus Mycocalia J.T. Palmer, 1961
- Genus Neosecotium R. Singer & A.H. Smith, 1960
- Genus Nidula V.S. White, 1902
- Genus Nidularia E.M. Fries in E.M. Fries & Nordholm, 1817
- Genus Nidularia Bulliard, 1791 accepted as Cyathus Haller, 1768
- Genus Notholepiota E. Horak, 1971
- Genus Omalycus Rafinesque, 1814 accepted as Calvatia E.M. Fries, 1849
- Genus Onchopus P.A. Karsten, 1879 accepted as Coprinus Persoon, 1797
- Genus Pachyderma S. Schulzer von Müggenburg, 1876 accepted as Mycenastrum Desvaux, 1842
- Genus Panaeolopsis R. Singer, 1969
- Genus Peziza Linnaeus, 1753 accepted as Cyathus Haller, 1768
- Genus Phaeolepiota Maire ex Konrad & Maublanc, 1928
- Genus Phaeopholiota M.V. Locquin & B.M. Sarwal, 1983
- Genus Phlebonema R. Heim, 1929
- Genus Phyllogaster D.N. Pegler in D.N. Pegler & T.W.K. Young, 1969
- Genus Piemycus Rafinesque, 1813 accepted as Bovista Persoon, 1794
- Genus Piesmycus Rafinesque, 1808 accepted as Bovista Persoon, 1794
- Genus Podaxis Desvaux, 1809
- Genus Polyplocium M.J. Berkeley, 1843 accepted as Gyrophragmium Montagne, 1843
- Genus Pratella (Persoon) S.F. Gray, 1821 accepted as Agaricus Linnaeus, 1753
- Genus Priapus Rafinesque, 1808 accepted as Lycoperdon Persoon, 1801
- Genus Psalliota (E.M. Fries) P. Kummer, 1871
- Genus Pselliophora P.A. Karsten, 1879 accepted as Coprinus Persoon, 1797
- Genus Pseudoauricularia Y. Kobayasi, 1982
- Genus Pseudocoprinus Kühner, 1928 accepted as Coprinus Persoon, 1797
- Genus Pseudolycoperdon Velenovský, 1947 accepted as Bovista Persoon, 1794
- Genus Pulverolepiota Bon, 1993 accepted as Cystolepiota Singer in Singer & Digilio, 1952
- Genus Queletia E.M. Fries, 1872
- Genus Rhacophyllus M.J. Berkeley & Broome, 1871
- Genus Rickella Locquin, 1952 accepted as Volvolepiota Singer, 1959
- Genus Ripartitella Singer, 1947
- Genus Rugosospora P. Heinemann, 1973
- Genus Sackea Rostkovius in J. Sturm, 1844 accepted as Bovista Persoon, 1794
- Genus Scaphophorum Ehrenberg ex Wallroth, 1833
- Genus Schinzinia Fayod, 1889
- Genus Schizostoma Ehrenberg ex Léveillé, 1846
- Genus Schulzeria Bresadola & Schulzer, 1886 accepted as Leucoagaricus Locquin ex Singer, 1948
- Genus Schweinitzia Greville, 1823 accepted as Podaxis Desvaux, 1809
- Genus Secotium G. Kunze, 1840
- Genus Sericeomyces P. Heinemann, 1978 accepted as Leucoagaricus Locquin ex Singer, 1948
- Genus Singerina A.V. Sathe & S. Deshpande, 1981
- Genus Smithiogaster J.E. Wright, 1975
- Genus Smithiomyces Singer, 1944
- Genus Sphaericeps Welwitsch & Currey, 1868 accepted as Battarrea Persoon, 1801
- Genus Sphaerocybis F.E. Clements, 1909
- Genus Stellifera Leman in F. Cuvier, 1824
- Genus Sufa Adanson, 1763 accepted as Lycoperdon Persoon, 1801
- Genus Termiticola E. Horak, 1979
- Genus Tulasnodea E.M. Fries, 1849 accepted as Tulostoma Persoon, 1794
- Genus Tulostoma Persoon, 1794
- Genus Verrucospora E. Horak, 1967
- Genus Volvolepiota Singer, 1959
- Genus Xanthagaricus (Heinemann) Sr. Little Flower, V.B. Hosagoudar & T.K. Abraham, 1997
- Genus Xerocoprinus R. Maire, 1907
- Genus Zerovaemyces L.F. Gorovij, 1977 accepted as Rhacophyllus M.J. Berkeley & Broome, 1871
- Family Agaricales incertae sedis
- Family Amanitaceae E.-J. Gilbert, 1940
- Family Arachniaceae accepted as Agaricaceae
- Family Asterogastraceae accepted as Hydnangiaceae
- Family Biannulariaceae W. Jülich, 1981
- Family Bolbitiaceae
- Family Broomeiaceae
- Family Callistosporiaceae A. Vizzini, G. Consiglio, M. Marchetti & P. Alvarado, 2020
- Family Clavariaceae
- Family Clitocybaceae A. Vizzini, G. Consiglio & M. Marchetti, 2020
- Family Coprinaceae accepted as Agaricaceae
- Family Cortinariaceae
- Family Cribbeaceae accepted as Cortinariaceae
- Family Cribbiaceae accepted as Cortinariaceae
- Family Cyphellaceae
- Family Entolomataceae
- Family Fistulinaceae
- Family Gigaspermataceae Jülich, 1981 accepted as Cortinariaceae
- Family Hemigasteraceae
- Family Hemigastraceae accepted as Hemigasteraceae
- Family Hydnangiaceae
- Family Hygrophoraceae
- Family Hymenogasteraceae accepted as Strophariaceae
- Family Hymenogastraceae accepted as Strophariaceae
- Family Inocybaceae
- Family Lepiotaceae accepted as Agaricaceae
- Family Lycoperdaceae F. Berchtold & J.S. Presl,1820
- Family Lyophyllaceae
- Family Marasmiaceae
- Family Mycenaceae
- Family Mycenastraceae accepted as Agaricaceae
- Family Mycospongiaceae accepted as Agaricales incertae sedis
- Family Niaceae Jülich, 1982
- Family Nidulariaceae accepted as Agaricaceae
- Family Omphalotaceae A. Bresinsky, 1985
- Family Palaeoclavariaceae †
- Family Phelloriniaceae
- Family Physalacriaceae
- Family Pleurotaceae
- Family Pluteaceae
- Family Podaxaceae accepted as Agaricaceae
- Family Porotheleaceae Murrill, 1916
- Family Psathyrellaceae
- Family Pterulaceae
- Family Rhodophyllaceae accepted as Entolomataceae
- Family Schizophyllaceae
- Family Secotiaceae accepted as Agaricaceae
- Family Strophariaceae
- Family Torrendiaceae accepted as Amanitaceae E.-J. Gilbert, 1940
- Family Tricholomataceae
- Family Tulostomataceae accepted as Agaricaceae
- Family Typhulaceae
- Family Volvariaceae accepted as Pluteaceae
- Family Xerulaceae accepted as Physalacriaceae
- Genus Annularia Rafinesque, 1815
- Order Agaricomycetes incertae sedis
- Order Agaricomycetidae incertae sedis
- Order Atheliales
- Order Auriculariales
- Order Boletales
- Order Cantharellales
- Order Corticiales
- Order Geastrales
- Order Gloeophyllales
- Order Gomphales
- Order Hymenochaetales
- Order Hysterangiales
- Order Phallales
- Order Polyporales
- Order Russulales
- Order Sebacinales
- Order Sistotremastrales
- Order Thelephorales
- Order Trechisporales
- Class Agaricostilbomycetes
- Class Atractiellomycetes
- Class Basidiomycota incertae sedis
- Class Classiculomycetes
- Class Cryptomycocolacomycetes
- Class Cystobasidiomycetes
- Class Dacrymycetes
- Class Entorrhizomycetes
- Class Exobasidiomycetes
- Class Geminibasidiomycetes
- Class Microbotryomycetes
- Class Mixiomycetes
- Class Pucciniomycetes
- Class Tremellomycetes
- Class Tritirachiomycetes
- Class Ustilaginomycetes
- Class Wallemiomycetes
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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