Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Subkingdom Eozoa
- Infrakingdom Excavata
- Phylum Loukozoa
- Phylum Metamonada
- Class Anaeromonadea
- Class Carpediemonadea accepted as Carpomonadea
- Class Carpomonadea
- Class Eopharyngea
- Class Hypermastigia accepted as Trichomonadea
- Class Parabasalia accepted as Trichomonadea
- Class Trepomonadea accepted as Eopharyngea
- Class Trichomonadea
- Order Cristamonadida
- Order Pimpavicka
- Order Spirotrichonymphida
- Order Trichomonadida
- Family Cochlosomatidae Tyzzer, 1930 accepted as Trichomonadidae Chalmers & Pekkoloa, 1918
- Family Cochlosomidae accepted as Trichomonadidae Chalmers & Pekkoloa, 1918
- Family Dientamoebidae Grassé, 1953
- Family Hexamastigidae Cepicka et al., 2010
- Family Honigbergiellidae Čepička et al., 2010
- Family Hypotrichomonadidae Honigberg, 1963
- Family Lacusteriidae Céza & Čepička in Céza et al., 2022
- Family Monocercomonadidae Kirby, 1944
- Genus Chilomitus O. da Fonseca, 1915
- Genus Coelotrichomastix A.C. Hollande, 1939
- Genus Ditrichomonas Cutler, 1919
- Genus Eutrichomastix Kofoid & Swezy, 1915 accepted as Monocercomonas Grassi, 1879
- Genus Monocercomonas Grassi, 1879
- Genus Parahistomonas Lund, 1963
- Genus Trichomastix F. Blochmann, 1884
- Species Trichomastix batrachorum Dobell
- Species Trichomastix caviae (Davaine) da Fonseca
- Species Trichomastix cuniculi Tanabe
- Species Trichomastix gallinarum Martin & Robertson
- Species Trichomastix lacertae Blochmann
- Species Trichomastix mabuiae Dobell
- Species Trichomastix motellae Alexeieff
- Species Trichomastix orthopterorum (Parisi) da Fonseca
- Species Trichomastix passali Tanabe
- Species Trichomastix ruminantium Braune
- Species Trichomastix salina Entz, 1904
- Species Trichomastix salinus Entz, 1904 accepted as Trichomastix salina Entz, 1904
- Species Trichomastix serpentis Dobell
- Species Trichomastix trichopterae Mackinnon
- Species Trichomastix trichopterum Mackinnon
- Family Simplicimonadidae Cepicka, Hampl & Kulda, 2010
- Family Tricercomitidae Cepicka et al., 2010
- Family Trichomonadaceae accepted as Trichomonadidae Chalmers & Pekkoloa, 1918
- Family Trichomonadida (awaiting allocation)
- Family Trichomonadida incertae sedis
- Family Trichomonadidae Chalmers & Pekkoloa, 1918
- Family Tritrichomonadidae Honigberg, 1963
- Genus Pseudotrichomonas Bishop, 1940
- Family Kofoidiidae
- Class Trichonymphea
- Family Hypermastigidae accepted as Metamonada
- Genus Barthelona Bernard, Simpson & Patterson, 2000
- Phylum Percolozoa
- Phylum Euglenophyta accepted as Euglenozoa
- Phylum Euglenozoa
- Subkingdom Sarcomastigota
- Subkingdom Zoomastigophora accepted as Sarcomastigota
- Phylum Hemimastigophora
- Phylum Nebulidia
- Phylum Nibbleridia
- Phylum Protozoa incertae sedis
- Phylum Rhizopoda accepted as Sarcomastigota
- Phylum Sarcomastigophora accepted as Sarcomastigota
- Class Mastigophora accepted as Sarcomastigota
- Class Protozoa (awaiting allocation)
- Genus Megaclonophycus Xue, Tang, Yu & Zhou, 1995 †
- Genus Megasphaera Chen & Liu, 1986 †
- Genus Parapandorina Xue, Tang, Yu & Zhou, 1995 †
- Genus Syssomonas Tikhonenkov, Hehenberger, Mylnikov & Keeling in Hehenberger et al., 2017
- Genus Tianzhushania L.M. Yin & Z.P. Li, 1978 †
- Genus Tunicaraptor Tikhonenkov et al., 2020
- Genus Yinitianzhushania S. Xiao, C. Zhou, P. Liu, D. Wang & X. Yuan, 2014 †
- Kingdom Viruses
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