Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Phylum Acanthocephala
- Phylum Agmata †
- Phylum Animalia (awaiting allocation)
- Phylum Animalia incertae sedis
- Phylum Annelida
- Phylum Arthropoda
- Subphylum Chelicerata
- Subphylum Crustacea
- Subphylum Hexapoda
- Class Collembola
- Class Diplura
- Class Entognatha accepted as Hexapoda
- Class Insecta
- Order Alienoptera † accepted as Blattodea
- Order Amphiesmenoptera incertae sedis †
- Order Anoplura accepted as Phthiraptera
- Order Archaeognatha
- Order Archaeorthoptera (awaiting allocation) †
- Order Archaeorthoptera incertae sedis
- Order Argentinoptera †
- Order Blattodea
- Order Blattoptera †
- Order Caloneurida
- Order Caloneurodea †
- Order Cnemidolestodea †
- Order Coleoptera
- Order Coxoplectoptera †
- Order Dermaptera
- Order Diaphanopterodea †
- Order Diaphanopteroidea accepted as Diaphanopterodea †
- Order Dicliptera †
- Order Dicondylia incertae sedis
- Order Dictyoptera (awaiting allocation)
- Order Dictyoptera incertae sedis
- Order Diptera
- Family Acartophthalmidae Czerny, 1928
- Family Acroceridae Leach, 1815
- Family Agromyzidae Fallén, 1823
- Family Alinkidae Krzemiński, 1992 † accepted as Procramptonomyiidae Kovalev, 1985 †
- Family Anisopidae accepted as Anisopodidae Knab, 1912
- Family Anisopodidae Knab, 1912
- Family Ansorgiidae Evenhuis, 1994 †
- Family Antefungivoridae Rohdendorf, 1938 †
- Family Anthomyiidae Latreille, 1829
- Family Anthomyzidae Czerny, 1903
- Family Apioceridae Bigot, 1857
- Family Apsilocephalidae Nagatomi, Saigusa, Nagatomi & Lyneborg, 1991
- Family Apystomyiidae Nagatomi & Liu, 1994
- Family Archisargidae Rohdendorf, 1951 †
- Family Architendipedidae Rohdendorf, 1962 † accepted as Ptychopteridae Osten Sacken, 1862
- Family Archizelmiridae Rohdendorf, 1962 †
- Family Asilidae Latreille, 1802
- Family Asiloidea incertae sedis
- Family Asiochaoboridae Hong & Wang, 1990 †
- Family Asteiidae Rondani, 1856
- Family Atelestidae Hennig, 1970
- Family Athericidae Nowicki, 1873
- Family Aulacigastridae Duda, 1924
- Family Australimyzidae Griffiths, 1972
- Family Austroleptidae Nagatomi, 1982
- Family Axymyiidae Shannon, 1921
- Family Bengaliidae Brauer & Bergenstamm, 1889
- Family Bibionidae Fleming, 1821
- Family Blephariceridae Loew, 1862
- Family Blepharoceridae accepted as Blephariceridae Loew, 1862
- Family Boholdoyidae Kovalev, 1985 †
- Family Bolithophilidae accepted as Bolitophilidae Winnertz, 1863
- Family Bolitophilidae Winnertz, 1863
- Family Bombylidae accepted as Bombyliidae Latreille, 1802
- Family Bombyliidae Latreille, 1802
- Family Borboridae Newman, 1834 accepted as Sphaeroceridae Macquart, 1835
- Family Brachystomatidae Melander, 1908
- Family Braulidae Egger, 1853
- Family Calliphoridae Brauer & Bergenstamm, 1889
- Family Camillidae Frey, 1921
- Family Campichoetidae Griffiths, 1972
- Family Canaceidae accepted as Canacidae Jones, 1906
- Family Canacidae Jones, 1906
- Family Canthyloscelidae Shannon, 1927
- Family Carnidae Newman, 1834
- Family Cascopleciidae Poinar, 2010 †
- Family Cecidomyiidae Newman, 1835
- Family Celyphidae Bigot, 1852
- Family Ceratopogonidae Newman, 1834
- Family Chamaemyiidae Hendel, 1910
- Family Chaoboridae Edwards, 1932
- Family Chimeromyiidae Grimaldi & Cumming, 2009 †
- Family Chironomidae Macquart, 1838
- Family Chironomoidea incertae sedis
- Family Chloropidae Rondani, 1856
- Family Christelenkidae Roháček, 2023 †
- Family Chyromyidae Hendel, 1916
- Family Circumphallidae Papp, 2011
- Family Clusiidae Hendel, 1916
- Family Clusiomitidae Roháček & Hoffeins, 2021 †
- Family Coelopidae Hendel, 1910
- Family Coenomyiidae
- Family Conopidae Latreille, 1802
- Family Cordyluridae
- Family Corethrellidae Edwards, 1932
- Family Cratomyiidae Mazzarolo & Amorim, 2000 † accepted as Zhangsolvidae Nagatomi & Yang, 1998 †
- Family Crosaphididae Kovalev, 1983 †
- Family Cryptochaetidae accepted as Cryptochetidae Brues & Melander, 1932
- Family Cryptochetidae Brues & Melander, 1932
- Family Ctenostylidae Bigot, 1882
- Family Culicidae Meigen, 1818
- Family Curtonotidae Enderlein, 1914
- Family Cuterebridae Brauer, 1887
- Family Cylindrotomidae Schiner, 1863
- Family Cypselosomatidae Hendel, 1931
- Family Deuterophlebiidae Edwards, 1922
- Family Dexiidae Sharp, 1887
- Family Deximorpha Brauer & Bergenstamm, 1889 accepted as Tachinidae Bigot, 1853
- Family Diadocidiidae Winnertz, 1863
- Family Diastatidae Hendel, 1917
- Family Dictyodipteridae Rohdendorf, 1961 †
- Family Diopsidae Billberg, 1820
- Family Diplopolyneuridae Rohdendorf, 1962 † accepted as Pediciidae Osten Sacken, 1860
- Family Diptera (awaiting allocation)
- Family Ditomyiidae Kylin, 1919
- Family Dixamimidae † accepted as Chaoboridae Edwards, 1932
- Family Dixidae Schiffner, 1868
- Family Dolichopodidae Latreille, 1809
- Family Drosophilidae Rondani, 1856
- Family Dryomyzidae Schiner, 1864
- Family Dyspolyneuridae Rohdendorf, 1961 †
- Family Elliidae Krzeminska, Blagoderov & Krezmiñski, 1993 †
- Family Empididae Latreille, 1804
- Family Eoditomyiidae Ansorge, 1996 †
- Family Eolimnobiidae Rohdendorf, 1962 †
- Family Eomyiidae Rohdendorf, 1962 †
- Family Eophlebomyiidae Cockerell, 1925 †
- Family Eopleciidae Rohdendorf, 1946 †
- Family Eopolyneuridae Rohdendorf, 1962 †
- Family Eoptychopteridae Handlirsch, 1906 † accepted as Ptychopteridae Osten Sacken, 1862
- Family Eostratiomyiidae Rohdendorf, 1962 †
- Family Ephydridae Zetterstedt, 1837
- Family Eremochaetidae Ussatchov, 1968 †
- Family Eremoneura (awaiting allocation)
- Family Eucaudomyiidae Grimaldi, 2016 †
- Family Eurychoromyiidae endel, 1910 accepted as Lauxaniidae Macquart, 1835
- Family Evocoidae Yeates, Irwin & Wiegmann, 2006
- Family Fanniidae Schnabl & Dziedzicki, 1911
- Family Fergusoninidae Hennig, 1958
- Family Fungivoritidae Rohdendorf, 1946 †
- Family Galliidae Lukashevich & Mostovski, 2023 †
- Family Gasterophilidae Girschner, 1896
- Family Geomyzidae Fallén, 1823 accepted as Opomyzidae Fallén, 1820
- Family Glossinidae Theobald, 1903
- Family Gobryidae McAlpine, 1997
- Family Gracilitipulidae Hong & Wang, 1990 † accepted as Pediciidae Osten Sacken, 1860
- Family Grauvogeliidae Krzemiński, Krzemińska & Papier, 1994 †
- Family Helcomyzidae Hendel, 1924
- Family Heleomyzidae Westwood, 1840
- Family Helomyzidae accepted as Heleomyzidae Westwood, 1840
- Family Helosciomyzidae Steyskal, 1965
- Family Hennigmatidae Shcherbakov, 1995 †
- Family Hesperinidae Walker, 1848
- Family Heterocheilidae McAlpine, 1991
- Family Heteropezidae Schiner, 1868
- Family Hilarimorphidae Williston, 1896
- Family Hippoboscidae Samouelle, 1819
- Family Hippoboscoidea incertae sedis †
- Family Hoffeinsmyiidae Michelsen, 2009 †
- Family Homalocnemiidae Collin, 1928
- Family Huttoninidae Steyskal, 1965
- Family Hybotidae Meigen, 1820
- Family Hyperoscelididae Hardy & Nagatomi, 1960
- Family Hyperpolyneuridae Rohdendorf, 1961 †
- Family Hypodermatidae Rondani, 1856
- Family Inbiomyiidae Buck, 2006
- Family Ironomyiidae McAlpine & Martin, 1966
- Family Iteaphilidae Wahlberg & Johanson, 2018
- Family Kaluginamyiidae Lukashevich, Pepinelli & Currie, 2020 †
- Family Keroplatidae Rondani, 1856
- Family Kovalevisargidae Mostovski, 1997 †
- Family Lauxaniidae Macquart, 1835
- Family Leptidae Burmeister, 1837 accepted as Rhagionidae Latreille, 1802
- Family Lestremiidae accepted as Cecidomyiidae Newman, 1835
- Family Limnorhyphidae Hong, 1983 † accepted as Perissommatidae Colless, 1962
- Family Limoniidae Speiser, 1909
- Family Lonchaeidae Loew, 1861
- Family Lonchopteridae Macquart, 1835
- Family Luanpingitidae Zhang, 1986 †
- Family Lygistorrhinidae Edwards, 1925
- Family Macroceridae Rondani, 1856
- Family Marginidae McAlpine, 1991
- Family Megamerinidae Hendel, 1913
- Family Mesophantasmatidae Rohdendorf, 1962 †
- Family Mesosciophilidae Rohdendorf, 1946 †
- Family Mesothaumaleidae † accepted as Thaumaleidae Bezzi, 1913
- Family Micropezidae Blanchard, 1840
- Family Microphoridae Collin, 1960 accepted as Dolichopodidae Latreille, 1809
- Family Milichiidae Schiner, 1862
- Family Mormotomyiidae Austen, 1936
- Family Muscidae Latreille, 1802
- Family Musidoromimidae Rohdendorf, 1962 †
- Family Mycetobiidae accepted as Anisopodidae Knab, 1912
- Family Mycetophilidae Newman, 1834
- Family Mydaidae accepted as Mydidae Latreille, 1809
- Family Mydidae Latreille, 1809
- Family Mystacinobiidae Holloway, 1976
- Family Mysteromyiidae Grimaldi, 2016 †
- Family Mythicomyiidae Melander, 1902
- Family Nadipteridae Lukashevich, 1995 †
- Family Nannodastiidae Papp, 1980
- Family Natalimyzidae Barraclough & McAlpine, 2006
- Family Nemestrinidae Griffith & Pidgeon, 1832
- Family Neminidae McAlpine, 1983
- Family Neriidae Westwood, 1840
- Family Neurochaetidae McAlpine, 1978
- Family Nothybidae Frey, 1927
- Family Nycteribiidae Samouelle, 1819
- Family Nymphomyiidae Tokunaga, 1932
- Family Ocoidae accepted as Evocoidae Yeates, Irwin & Wiegmann, 2006
- Family Odiniidae Hendel, 1920
- Family Oestridae Leach, 1815
- Family Oligophryneidae Rohdendorf, 1962 † accepted as Anisopodidae Knab, 1912
- Family Oligophrynidae Rohdendorf, 1962 † accepted as Anisopodidae Knab, 1912
- Family Opetiidae Rondani, 1856
- Family Opomyzidae Fallén, 1820
- Family Oreoleptidae Zloty, Sinclair & Pritchard, 2005
- Family Orientisargidae Zhang, 2012 †
- Family Ortalidae Fallén, 1810 accepted as Ulidiidae Macquart, 1835
- Family Otitidae Aldrich, 1932 accepted as Ulidiidae Macquart, 1835
- Family Pachyneuridae Schiner, 1864
- Family Palaeolimnobiidae Zhang, Zhang, Liu & Shangguan, 1986 † accepted as Pediciidae Osten Sacken, 1860
- Family Palaeophoridae Rohdendorf, 1951 †
- Family Palaeopleciidae Rohdendorf, 1962 †
- Family Palaeostratiomyiidae Rohdendorf, 1938 † accepted as Rhagionidae Latreille, 1802
- Family Pallopteridae Loew, 1862
- Family Panthophthalmidae accepted as Pantophthalmidae Bigot, 1882
- Family Pantophthalmidae Bigot, 1882
- Family Parapleciidae Hong, 1983 † accepted as Paraxymyiidae Rohdendorf, 1946 †
- Family Paratendipedidae Hong & Wang, 1990 † accepted as Serendipidae Evenhuis, 1994 †
- Family Paraxymyiidae Rohdendorf, 1946 †
- Family Pediciidae Osten Sacken, 1860
- Family Pelecorhynchidae Enderlein, 1922
- Family Periscelidae accepted as Periscelididae Oldenberg, 1914
- Family Periscelididae Oldenberg, 1914
- Family Perissomatidae Colless, 1962 accepted as Perissommatidae Colless, 1962
- Family Perissommatidae Colless, 1962
- Family Phaeomyiidae Verbeke, 1950
- Family Phasiidae Robineau-Desvoidy, 1830 accepted as Tabanidae Latreille, 1802
- Family Phlebotomidae accepted as Psychodidae Newman, 1834
- Family Phoridae Curtis, 1833
- Family Phragmoligoneuridae Rohdendorf, 1962 † accepted as Protopleciidae Rohdendorf, 1946 †
- Family Piophilidae Macquart, 1835
- Family Pipunculidae Walker, 1834
- Family Platypezidae Fallén, 1815
- Family Platystomatidae Schiner, 1862
- Family Pleciidae Duda, 1930 accepted as Bibionidae Fleming, 1821
- Family Pleciodictyidae Rohdendorf, 1962 † accepted as Protopleciidae Rohdendorf, 1946 †
- Family Pleciofungivoridae Rohdendorf, 1946 †
- Family Pleciomimidae Rohdendorf, 1946 † accepted as Antefungivoridae Rohdendorf, 1938 †
- Family Polleniidae Brauer & Bergenstamm, 1889
- Family Procramptonomyiidae Kovalev, 1985 †
- Family Proneottiophilidae Hennig, 1969 †
- Family Protapioceridae Ren, 1998 †
- Family Protempididae Ussatchov, 1968 †
- Family Protendipedidae Rohdendorf, 1962 †
- Family Protobibionidae Rohdendorf, 1946 †
- Family Protobrachyceridae Rohdendorf, 1962 †
- Family Protobrachycerontidae † accepted as Protobrachyceridae Rohdendorf, 1962 †
- Family Protoligoneuridae Rohdendorf, 1962 † accepted as Protopleciidae Rohdendorf, 1946 †
- Family Protomphralidae Rohdendorf, 1962 †
- Family Protopleciidae Rohdendorf, 1946 †
- Family Protorhyphidae Handlirsch, 1906 †
- Family Protoscatopsidae Rohdendorf, 1946 †
- Family Pseudopomyzidae McAlpine, 1966
- Family Psilidae Macquart, 1835
- Family Psychodidae Newman, 1834
- Family Psychodoidea incertae sedis
- Family Ptychopteridae Osten Sacken, 1862
- Family Pyrgotidae Schiner, 1868
- Family Rangomaramidae Jaschhof & Didham, 2002
- Family Rhaetomyiidae Rohdendorf, 1962 †
- Family Rhagionemestriidae Ussatchov, 1968 †
- Family Rhagionempididae Rohdendorf, 1951 †
- Family Rhagionidae Latreille, 1802
- Family Rhiniidae Brauer & Bergenstamm, 1889
- Family Rhinophoridae Robineau-Desvoidy, 1863
- Family Rhinotoridae Williston, 1896 accepted as Heleomyzidae Westwood, 1840
- Family Rhopalomeridae accepted as Ropalomeridae Schiner, 1868
- Family Rhyphidae Newman, 1834 accepted as Anisopodidae Knab, 1912
- Family Richardidae accepted as Richardiidae Loew, 1868
- Family Richardiidae Loew, 1868
- Family Ropalomeridae Schiner, 1868
- Family Sapromyzidae accepted as Lauxaniidae Macquart, 1835
- Family Sarcophagidae Macquart, 1834
- Family Scathophagidae Cresson, 1918
- Family Scatophagidae Robineau-Desvoidy, 1830 accepted as Scathophagidae Cresson, 1918
- Family Scatopsidae Newman, 1834
- Family Scenopinidae Fallén, 1817
- Family Sciadoceridae Schmitz, 1929
- Family Sciaridae Billberg, 1820
- Family Sciaroidea incertae sedis
- Family Sciomyzidae Fallén, 1820
- Family Sepsidae Walker, 1833
- Family Serendipidae Evenhuis, 1994 †
- Family Siberhyphidae †
- Family Simuliidae Newman, 1834
- Family Sinotendipedidae † accepted as Anisopodidae Knab, 1912
- Family Somatiidae Hendel, 1935
- Family Spaniidae Rondani, 1856 accepted as Rhagionidae Latreille, 1802
- Family Sphaeoroceridae accepted as Sphaeroceridae Macquart, 1835
- Family Sphaeroceridae Macquart, 1835
- Family Stenomicridae Papp, 1984 accepted as Periscelididae Oldenberg, 1914
- Family Stratiomyidae Latreille, 1802
- Family Streblidae Kolenati, 1863
- Family Stronglyophthalmyiidae accepted as Strongylophthalmyiidae Hendel, 1917
- Family Strongylophthalmyiidae Hendel, 1917
- Family Synneuridae Enderlein, 1936 accepted as Canthyloscelidae Shannon, 1927
- Family Syringogastridae Prado, 1969
- Family Syrphidae Latreille, 1802
- Family Tabanidae Latreille, 1802
- Family Tachinidae Bigot, 1853
- Family Tachiniscidae Kertész, 1903
- Family Tanyderidae Osten Sacken, 1880
- Family Tanyderophryneidae Rohdendorf, 1962 † accepted as Chaoboridae Edwards, 1932
- Family Tanypezidae Rondani, 1856
- Family Tephritidae Newman, 1834
- Genus Abebaiodacus Munro, 1984
- Genus Acanodacus Munro, 1984
- Genus Acanthineura Agassiz, 1846 accepted as Acanthonevra Macquart, 1843
- Genus Acanthiophilus Becker, 1908
- Genus Acanthipeza Rondani, 1875 accepted as Adrama Walker, 1859
- Genus Acanthoneura Schiner, 1868 accepted as Acanthonevra Macquart, 1843
- Genus Acanthonevra Macquart, 1843
- Genus Acanthonevroides Permkam & Hancock, 1995
- Genus Acida Zetterstedt, 1847 accepted as Acidia Robineau-Desvoidy, 1830
- Genus Acidia Robineau-Desvoidy, 1830
- Genus Acidiella Hendel, 1914
- Genus Acidigona Coquillett, 1910 accepted as Acidogona Loew, 1873
- Genus Acidiostigma Hendel in Lindner, 1927
- Genus Acidioxantha Hendel, 1915 accepted as Acidoxantha Hendel, 1914
- Genus Acidioxantha Shiraki, 1933 accepted as Acidoxantha Hendel, 1914
- Genus Acidogona Loew, 1873
- Genus Acidostigma Hendel, 1927
- Genus Acidoxantha Hendel, 1914
- Genus Acidoxanthopsis Hering, 1941
- Genus Acidura Agassiz, 1846 accepted as Aciura Robineau-Desvoidy, 1830
- Genus Acinia Robineau-Desvoidy, 1830
- Genus Acinoeuphranta Hardy, 1971
- Genus Aciura Robineau-Desvoidy, 1830
- Genus Aciurina Curran, 1932
- Genus Aciuropsis Hardy, 1974
- Genus Acroceratitis Hendel, 1913
- Genus Acronneus Munro, 1939
- Genus Acropteromma Bezzi, 1926
- Genus Acrorellia Wang, 1990
- Genus Acrotaenia Loew, 1873
- Genus Acrotaeniacantha Hering, 1939
- Genus Acrotaeniostola Hendel, 1914
- Genus Acrotoxa Loew, 1873
- Genus Actinoptera Rondani, 1871
- Genus Acydia Rondani, 1871 accepted as Acidia Robineau-Desvoidy, 1830
- Genus Acynia Rondani, 1870 accepted as Acinia Robineau-Desvoidy, 1830
- Genus Acyura Rondani, 1863 accepted as Aciura Robineau-Desvoidy, 1830
- Genus Adrama Walker, 1859
- Genus Adramoides Hardy, 1973
- Genus Aedaspis Rondani, 1870 accepted as Oedaspis Loew, 1862
- Genus Aethiothemara Hendel, 1928
- Genus Afraciura Hering, 1941
- Genus Afreutreta Bezzi, 1924
- Genus Afrocneros Bezzi, 1924
- Genus Afrodacus Bezzi, 1924
- Genus Agallamyia Norrbom, 2010
- Genus Agaristina Hering, 1953
- Genus Aglaodacus Munro, 1984
- Genus Agnitrena Korneyev & Norrbom, 2006
- Genus Agnostophana Hering, 1953
- Genus Aischrocrania Hendel in Lindner, 1927
- Genus Alcidia Woodworth, 1913 accepted as Euleia Walker, 1835
- Genus Aleomyia Phillips, 1923
- Genus Aliasutra Korneyev, 2012
- Genus Alincocallistomyia Hardy, 1986
- Genus Aliniana Hering, 1951 accepted as Campiglossa Rondani, 1870
- Genus Allocraspeda Rikhter, 1972
- Genus Alloeomyia Hardy, 1986
- Genus Allotrypes Bezzi, 1920
- Genus Allotrypomyia Cogan & Munro, 1980
- Genus Alsangelisca Ito, 1984
- Genus Alujamyia Norrbom, 2006
- Genus Ambitidacus Munro, 1984
- Genus Anastrepha Schiner, 1868
- Genus Anastrephoides Hendel in Lindner, 1927
- Genus Anchiacanthonevra Hardy, 1986
- Genus Ancylodacus Munro, 1984
- Genus Andriadacus Munro, 1984
- Genus Angelogelasinus Ito, 1984
- Genus Anomaea Walker, 1856 accepted as Anomoia Walker, 1835
- Genus Anomoea Lacordaire, 1848 accepted as Anomoia Walker, 1835
- Genus Anomoia Walker, 1835
- Genus Anomoiodacus Munro, 1984
- Genus Anomoja Rondani, 1871 accepted as Anomoia Walker, 1835
- Genus Anoplomus Bezzi, 1913
- Genus Antisophira Hardy, 1974
- Genus Antoxya Munro, 1957
- Genus Aoptodacus Munro, 1984
- Genus Apiculonia Wang, 1990
- Genus Apodacus Perkins, 1939
- Genus Arabodesis Merz & Dawah, 2005
- Genus Archiphytalmia Enderlein, 1936
- Genus Aridonerva Permkam & Hancock, 1995
- Genus Aridonevra Permkam & Hancock, 1995
- Genus Asiadacus Perkins, 1937
- Genus Asimoneura Czerny, 1909
- Genus Aspilomyia Hendel, 1907 accepted as Neaspilota Osten-Sacken, 1878
- Genus Aspilota Loew, 1873 accepted as Neaspilota Osten-Sacken, 1878
- Genus Athlodacus Munro, 1984
- Genus Audia Zetterstedt, 1849 accepted as Acidia Robineau-Desvoidy, 1830
- Genus Auricochlear Ito, 2011
- Genus Australasinia Hancock, 2001
- Genus Austrodacus Perkins, 1937
- Genus Austronevra Permkam & Hancock, 1995
- Genus Austrorioxa Permkam & Hancock, 1995
- Genus Austrotephritis Hancock & Drew, 2003
- Genus Axania Enderlein, 1920 accepted as Ichneumonosoma Meijere, 1914
- Genus Axiothauma Munro, 1947
- Genus Bactrocera Macquart, 1835
- Genus Bactrocera Guérin-Méneville, 1838 accepted as Bactrocera Macquart, 1835
- Genus Bactropota Bezzi, 1924
- Genus Barpleygma Coquillett, 1910 accepted as Baryplegma Wulp, 1899
- Genus Baryglossa Bezzi, 1918
- Genus Baryplegma Wulp, 1899
- Genus Baucidacus Munro, 1984
- Genus Bevismyia Munro, 1957
- Genus Bezziella Munro, 1937 accepted as Bezzina Munro, 1957
- Genus Bezzina Munro, 1957
- Genus Biretmus Munro, 1947
- Genus Bistrispinaria Speiser, 1913
- Genus Blaxodacus Munro, 1984
- Genus Blepharoneura Loew, 1873
- Genus Brachiopterna Bezzi, 1924
- Genus Brachyaciura Bezzi, 1924
- Genus Brachydesis Hancock, 1986
- Genus Brachytes Hendel, 1914 accepted as Hetschkomyia Hendel, 1914
- Genus Brachytrupanea Hancock, 1986
- Genus Brandtomyia Hardy, 1986
- Genus Breviculala Ito, 1984 accepted as Pseudacidia Munro, 1935
- Genus Bulgaroedaspis Drensky, 1943 accepted as Oedaspis Loew, 1862
- Genus Bulladacus Drew & Hancock, 1995
- Genus Buloloa Hardy, 1986
- Genus Caenoriata Foote, 1978
- Genus Calantra Loew, 1862 accepted as Callantra Walker, 1860
- Genus Callachna Aldrich, 1929
- Genus Callantra Walker, 1860
- Genus Callistomyia Bezzi, 1913
- Genus Calloptera Freidberg, 2002
- Genus Calodacus Hancock, 2015 accepted as Bactrocera Macquart, 1835
- Genus Calopteromyia Bigot, 1889 accepted as Ischyropteron Bigot, 1889
- Genus Calosphenisca Hendel, 1914
- Genus Camaromyia Hendel, 1914
- Genus Campiglossa Rondani, 1870
- Genus Capitites Foote & Freidberg, 1980
- Genus Capparidacus Hancock & Drew, 2018 accepted as Bactrocera Macquart, 1835
- Genus Capparimyia Bezzi, 1919
- Genus Carphotricha Loew, 1862
- Genus Carpomya Costa, 1854
- Genus Carpomya Rondani, 1856 accepted as Cerajocera Rondani, 1856
- Genus Carpomyia Loew, 1862 accepted as Carpomya Rondani, 1856
- Genus Carpomyza Schiner, 1868
- Genus Carpophthoracidia
- Genus Carpophthorella Hendel, 1914
- Genus Carpophthoromyia Austen, 1910
- Genus Carpotricha Rondani, 1870 accepted as Carphotricha Loew, 1862
- Genus Cecidocharella Hendel, 1936
- Genus Cecidochares Bezzi, 1910
- Genus Celidodacus Hendel, 1914
- Genus Celidosphenella Hendel, 1914
- Genus Cephalophysa Hering, 1940
- Genus Cerajocera Rondani, 1856 accepted as Terellia Robineau-Desvoidy, 1830
- Genus Ceratalaspis Hancock, 1984
- Genus Ceratitella Malloch, 1939
- Genus Ceratites Agassiz, 1846 accepted as Ceratitis MacLeay, 1829
- Genus Ceratitis MacLeay, 1829
- Genus Ceratitisoma Zia, 1964
- Genus Ceratitoedaspis Aczél, 1953
- Genus Ceratitoides Hendel, 1928
- Genus Ceratodacus Hendel, 1914
- Genus Ceriocera Rondani, 1870 accepted as Cerajocera Rondani, 1856
- Genus Cervarita Tseng, Chu & Chen, 1992
- Genus Cesaspheniscus Koçak & Kemal, 2009
- Genus Chaetellipsis Bezzi, 1913
- Genus Chaetodacus Bezzi, 1913
- Genus Chaetomerella de Meyere, 1914
- Genus Chaetorellia Hendel in Lindner, 1927
- Genus Chaetorhagoletis
- Genus Chaetostoma Rondani, 1869 accepted as Chetostoma Rondani, 1856
- Genus Chaetostomella Hendel in Lindner, 1927
- Genus Chaotodacus
- Genus Cheesmanomyia Malloch, 1939
- Genus Chejuparia Kwon, 1985
- Genus Chelyophora Rondani, 1875
- Genus Chenacidiella Shiraki, 1968
- Genus Chenacidillea Edwards & Tobias, 1993 accepted as Chenacidiella Shiraki, 1968
- Genus Chenacidillea Shiraki, 1968 accepted as Chenacidiella Shiraki, 1968
- Genus Chetostoma Rondani, 1856
- Genus Chipingomyia Hancock, 1986
- Genus Choetodacus Tryon, 1926 accepted as Chaetodacus Bezzi, 1913
- Genus Chrysaciura Aczél, 1953
- Genus Chrysotrypanea Malloch, 1939
- Genus Cipomyia Norrbom & Prado, 2006
- Genus Cladotricha Hering, 1941 accepted as Heringomyia Hardy, 1986
- Genus Cladotricha Hering, 1940 accepted as Cladotricha Hering, 1941
- Genus Cleitamiphanes Hering, 1941
- Genus Clematochaeta Hering, 1941
- Genus Clinotaenia Bezzi, 1920
- Genus Clusiomorpha Hering, 1941
- Genus Clusiosoma Malloch, 1926
- Genus Clusiosomina Malloch, 1939
- Genus Coccinodacus Munro, 1984
- Genus Coelopacidia Enderlein, 1911
- Genus Coelotrypes Bezzi, 1924
- Genus Collessomyia Hardy & Drew, 1996
- Genus Colobostrella Hendel, 1914
- Genus Colobostroter Enderlein, 1911
- Genus Conionota Munro, 1947
- Genus Conradtina Enderlein, 1911
- Genus Cooronga Hardy & Drew, 1996
- Genus Copiolepis Enderlein, 1920
- Genus Cordylopteryx Hering, 1941
- Genus Cornutrypeta Han & Wang in Hang, Wang & Kim, 1993
- Genus Cosmetothrix Munro, 1952
- Genus Costalimaia Hering, 1947
- Genus Costamyia Hernández-Ortiz, 2006 accepted as Hexachaeta Loew, 1873
- Genus Costogonia Dirlbeck & Dirlbeck, 1971
- Genus Craspedoxantha Bezzi, 1913
- Genus Craspedoxanthitea Hardy, 1987
- Genus Cribrorioxa Hering, 1952
- Genus Crinitisophira Hardy, 1986
- Genus Cristobalia Malloch, 1939
- Genus Cryptaciura Hendel in Lindner, 1927 accepted as Euleia Walker, 1835
- Genus Cryptodacus Hendel, 1914
- Genus Cryptophorellia Freidberg & Hancock, 1989
- Genus Cryptoplagia Aczél, 1952
- Genus Cryptotreta Blanc & Foote, 1961
- Genus Cryptotretra Edwards & Vevers, 1975 accepted as Cryptotreta Blanc & Foote, 1961
- Genus Curticella Hardy, 1959
- Genus Curvinervus Hardy, 1959
- Genus Cyaforma Wang, 1989
- Genus Cyanodesmops Munro, 1931
- Genus Cycasia Malloch, 1942
- Genus Cyclopsia Malloch, 1939
- Genus Cyrtostola Hancock & Drew, 1999
- Genus Dacimita David & Hancock, 2022
- Genus Dacopsis Hering, 1944
- Genus Daculus Speiser, 1924
- Genus Dacus Fabricius, 1805
- Genus Dasyneuba
- Genus Dasyneura Saunders, 1842
- Genus Dectodesis Munro, 1957
- Genus Deroparia Munro, 1957
- Genus Desmella Munro, 1957
- Genus Desmodacus Munro, 1984
- Genus Diarrhegma Bezzi, 1913
- Genus Diarrhegmoides Malloch, 1939
- Genus Dicheniotes Munro, 1938
- Genus Dichoedaspis Hendel in Lindner, 1927 accepted as Oedaspis Loew, 1862
- Genus Dictyotrypeta Hendel, 1914
- Genus Didacus Collart, 1935
- Genus Dietheria Hardy, 1973
- Genus Dimeringophrys Enderlein, 1911
- Genus Dioxyna Frey, 1945
- Genus Diplochorda Osten-Sacken, 1881
- Genus Diplodacus May, 1951
- Genus Dirioxa Hendel, 1928
- Genus Dithricha Rondani, 1856 accepted as Dithryca Rondani, 1856
- Genus Dithryca Rondani, 1856
- Genus Ditricha Hendel, 1914 accepted as Dithryca Rondani, 1856
- Genus Ditricha Rondani, 1871 accepted as Dithryca Rondani, 1856
- Genus Ditryca Becker in Becker-Kertész, 1905 accepted as Dithryca Rondani, 1856
- Genus Dixoodacus Munro, 1984
- Genus Donara Rikhter, 1972
- Genus Dorycricus Munro, 1947
- Genus Dorylodacus Munro, 1984
- Genus Dracontomyia Becker, 1920
- Genus Drosanthus Hering, 1952
- Genus Dryadodacryma Ito, 1984
- Genus Dyseuaresta Hendel, 1928
- Genus Dytricha Rondani, 1870 accepted as Dithryca Rondani, 1856
- Genus Ectopodacus Munro, 1984
- Genus Ectopomyia Hardy, 1973
- Genus Elaimya Robineau-Desvoidy in Blainville et al., 1826
- Genus Elaphomyia Saunders, 1861
- Genus Elaphromyia Bigot, 1859
- Genus Elgonina Munro, 1957
- Genus Elleipsa Hardy, 1970
- Genus Embaspis Munro, 1952
- Genus Emheringia Hardy in Hardy & Foots, 1989
- Genus Enicoptera Macquart, 1848
- Genus Enicopterina Malloch, 1939
- Genus Enoplopteron Meijere, 1915
- Genus Ensina Robineau-Desvoidy, 1830
- Genus Epacrocerus Hardy, 1982
- Genus Epidesmia Rondani, 1856 accepted as Prionimera Rondani, 1861
- Genus Epidesmya Rondani, 1861 accepted as Epidesmia Rondani, 1856
- Genus Epinettyra Permkam & Hancock, 1995
- Genus Epochra Loew, 1873
- Genus Epochrella Hering, 1961
- Genus Epochrinopsis Hering, 1939
- Genus Erectovena Ito, 1984
- Genus Esacidia Ito, 1984
- Genus Euaresta Loew, 1873
- Genus Euarestella Hendel in Lindner, 1927
- Genus Euarestoides Benjamin, 1934
- Genus Euarestopsis Hering, 1937
- Genus Eucecidochares Bezzi, 1916
- Genus Euchaetostoma Chen, 1948
- Genus Eucosmoptera Phillips, 1923
- Genus Euleia Walker, 1835
- Genus Eumictoxenus Munro, 1962
- Genus Euphranta Loew, 1862
- Genus Euphrantochlaena Hering, 1940
- Genus Eupterocalla Brèthes, 1916
- Genus Eurasimona Korneyev & White, 1991
- Genus Euribia Meigen, 1800
- Genus Europhora accepted as Urophora Robineau-Desvoidy, 1830
- Genus Eurosta Loew, 1873
- Genus Eurostina Curran, 1932
- Genus Eurostina Foote, Blanc & Norrbom, 1993
- Genus Euryphalara Munro, 1938
- Genus Eustreta
- Genus Euthauma Munro, 1949
- Genus Eutreta Loew, 1873
- Genus Eutretopsis Norrbom & Prado, 2006
- Genus Eutretosoma
- Genus Exallosophira Hardy, 1980
- Genus Felderimyia Hendel, 1914
- Genus Feshyia Ito, 1984 accepted as Philophylla Rondani, 1870
- Genus Flaviludia Ito, 1984
- Genus Footerellia Norrbom & Foote, 2000
- Genus Forellia Robineau-Desvoidy, 1830 accepted as Trypeta Meigen, 1803
- Genus Freidbergia Merz, 2000
- Genus Freyomyia Hardy, 1974
- Genus Fusciludia Ito, 1984
- Genus Fusodacus Munro, 1984
- Genus Galada Hering, 1961
- Genus Galbifascia Hardy, 1973
- Genus Gastrozona Bezzi, 1913
- Genus Gerrhoceras Hering, 1942
- Genus Ghentia Munro, 1947
- Genus Gibbifronta David, Hancock & Han, 2021
- Genus Goedenia Freidberg & Norrbom, 2000
- Genus Goniglossum Rondani, 1856 accepted as Carpomya Costa, 1854
- Genus Gonioglossum Hendel, 1914 accepted as Carpomya Costa, 1854
- Genus Gonioxyna Hendel in Lindner, 1927
- Genus Goniurellia Hendel in Lindner, 1927
- Genus Gonyglossum Bezzi, 1910 accepted as Carpomya Costa, 1854
- Genus Gonyglossum Efflatoun, 1924 accepted as Carpomya Costa, 1854
- Genus Grandoxyna Dirlbeck & Dirlbeck, 1971
- Genus Gressittidium Hardy, 1986
- Genus Griphomyia Hardy, 1987
- Genus Guyodacus Munro, 1984
- Genus Gymnaciura Hering, 1942
- Genus Gymnocarena Hering, 1940
- Genus Gymnodacus Munro, 1938
- Genus Gymnosagena Munro, 1935
- Genus Haemilea Rondani, 1871 accepted as Hemilea Loew, 1862
- Genus Halterophora Rondani, 1861 accepted as Ceratitis MacLeay, 1829
- Genus Hamouchaeta Blanchard, 1929
- Genus Hancockius Koçak & Kemal, 2009
- Genus Hardyadrama Lee, 1991
- Genus Haywardina Aczél, 1952
- Genus Heliotrypeta Richter & Kandybina, 1985
- Genus Hemiclusiosoma Hardy, 1986
- Genus Hemigymnodacus Hardy, 1973 accepted as Bactrocera Macquart, 1835
- Genus Hemilea Loew, 1862
- Genus Hemileoides Rodendorf, 1955
- Genus Hemileophila Hering, 1940
- Genus Heminotodacus Drew, 1989
- Genus Hemiparatridacus Drew, 1989
- Genus Hemiristina Permkam & Hancock, 1995
- Genus Hemisurstylus Drew, 1989
- Genus Hendelina
- Genus Hendrella Munro, 1938
- Genus Henicoptera Loew, 1873 accepted as Enicoptera Macquart, 1848
- Genus Heringomyia Hardy, 1986
- Genus Hermannloewia Bezzi, 1924
- Genus Heterosophira Hardy, 1973
- Genus Hetschkomyia Hendel, 1914
- Genus Hexachaeta Loew, 1873
- Genus Hexacinia Hendel, 1914
- Genus Hexamela Ziz, 1963
- Genus Hexaptilona Hering, 1940
- Genus Hexaresta Hering, 1941
- Genus Homiothemara Hardy, 1988
- Genus Homochromotricha Ito, 2011 accepted as Homoeotricha Hering, 1944
- Genus Homoeothrix Hering, 1944
- Genus Homoeotricha Hering, 1944
- Genus Homoiothemara
- Genus Hoplandromyia Bezzi, 1923
- Genus Hoplochaeta Shiraki, 1933
- Genus Hoplocheta Rondani, 1870 accepted as Oplocheta Rondani, 1856
- Genus Hoplogaster Rondani, 1871 accepted as Oplogaster Rondani, 1856
- Genus Hoplolopha Bezzi, 1920 accepted as Hoplolophomyia Bezzi, 1926
- Genus Hoplolophomyia Bezzi, 1926
- Genus Hyaloctoides Munro, 1937
- Genus Hyalopeza Hardy & Drew, 1996
- Genus Hyalotephritis Freidberg, 1979
- Genus Hyleurinus Ito, 1984
- Genus Hypenidium Loew, 1862
- Genus Hyponeothemara Hardy, 1986
- Genus Icaria Schiner, 1868
- Genus Ichneumonomacula Chen, 2020
- Genus Ichneumonopsis Hardy, 1973
- Genus Ichneumonosoma Meijere, 1914
- Genus Icterica Loew, 1873
- Genus Ictericodes Hering, 1942
- Genus Icteroptera Van der Wulp, 1899
- Genus Ihekaze Ito, 1984
- Genus Indaciura Hering, 1942
- Genus Indaresta Hering, 1941
- Genus Indophranta Agarwal & Kapoor, 1989
- Genus Insizwa Munro, 1929
- Genus Inuromaesa Korneyev & White, 1991
- Genus Ischyropteron Bigot, 1889
- Genus Isoconia Munro, 1947
- Genus Itosigo Ito, 1984
- Genus Jacotella Munro, 1947
- Genus Jamesomyia Quisenberry, 1949
- Genus Janseidacus Munro, 1984
- Genus Javadacus Hardy, 1983 accepted as Bactrocera Macquart, 1835
- Genus Kambangania Meijere, 1914
- Genus Karphodacus Munro, 1984
- Genus Kartabia Curran, 1934
- Genus Katonaia Munro, 1935
- Genus Kedadrama Hancock & Drew, 2005
- Genus Kertesziola Hering, 1941
- Genus Kertésziola Hering, 1941 accepted as Kertesziola Hering, 1941
- Genus Kerzhnerella Rikhter, 1975
- Genus Kwasilparia Kwon, 1985
- Genus Labeschatia Munro, 1967
- Genus Lactodacus Munro, 1984
- Genus Lagarosia Van der Wulp, 1891
- Genus Laksyetsa Foote, 1978
- Genus Lalobia Hardy, 1987
- Genus Lalokia
- Genus Lamplocrystallopteron Ito, 2011
- Genus Lamproxyna Hendel, 1914
- Genus Lamproxynella Hering, 1942
- Genus Langatia Hancock & Drew, 1995
- Genus Lenitovena Ito, 1984
- Genus Leptoxida Macquart, 1835 accepted as Leptoxyda Macquart, 1835
- Genus Leptoxyda Macquart, 1835
- Genus Leptoxys Macquart, 1843
- Genus Lethyna Munro, 1957
- Genus Leucotaeniella Bezzi, 1918
- Genus Leucothrix Munro, 1929
- Genus Lewinsohnia Norrbom & Prado, 2006
- Genus Lezca Foote, 1978
- Genus Liepana Hardy & Drew, 1996
- Genus Lilloaciura Aczél, 1953
- Genus Longiusculala Ito, 1984
- Genus Lophodacus Collart, 1935
- Genus Loriomyia Kertész, 1899
- Genus Lucumaphila Stone, 1939
- Genus Lumirioxa Permkam & Hancock, 1995
- Genus Lyronotum Hering, 1941
- Genus Machaomyia Hendel, 1914
- Genus Macrotrypeta Portschinsky, 1892
- Genus Magnimyiolia Shiraki, 1933
- Genus Malagaciura Hancock, 1991
- Genus Malaisella Hering, 1939
- Genus Malaisinia Hering, 1939
- Genus Malica Richter, 1974
- Genus Manicomyia Hancock, 1986
- Genus Marquesadacus Malloch, 1932
- Genus Marriottella Munro, 1939
- Genus Mastigolina Munro, 1937
- Genus Matsumuracidia Ito, 1949
- Genus Matsumurania Shiraki, 1933
- Genus Mauritidacus Munro, 1984
- Genus Megarrhagoletis
- Genus Melanodacus Perkins, 1937
- Genus Melanoedaspis Hendel in Lindner, 1927
- Genus Melanoedaspsis Hendel, 1927 accepted as Oedaspis Loew, 1862
- Genus Melanopterella Freidberg, 2002
- Genus Melanotrypana Hering, 1944
- Genus Mellesis Bezzi, 1916
- Genus Meracantha Macquart, 1851 accepted as Meracanthomyia Hendel, 1910
- Genus Meracanthomyia Hendel, 1910
- Genus Merzomyia Korneyev, 1996
- Genus Mesaraelia Blanchard, 1929
- Genus Mesoclanis Munro, 1938
- Genus Metasphenisca Hendel, 1914
- Genus Metatephritis Foote, 1960
- Genus Metidacus Munro, 1938
- Genus Micronevrina Permkam & Hancock, 1995
- Genus Microrrhagoletis Rodendorf, 1961
- Genus Microtreta Freidberg, 2002
- Genus Mictodacus Munro, 1984
- Genus Migmella Munro, 1957
- Genus Mikimyia Bigot, 1884 accepted as Toxotrypana Gerstaecker, 1860
- Genus Mimoeuphranta Hardy, 1986
- Genus Mimosophira Hardy, 1973
- Genus Molynocoelia Giglio-Tos, 1893
- Genus Monacidia Ito, 1984
- Genus Monacrostichus Bezzi, 1914
- Genus Montiludia Ito, 1984
- Genus Morinowotome Ito, 1984
- Genus Moritsugia Shiraki, 1933
- Genus Muhabbetiella Koçak & Kemal, 2009
- Genus Multireticula Merz, 2000 †
- Genus Munroedaspis Hering, 1940 accepted as Oedaspis Loew, 1862
- Genus Munroella Bezzi, 1924
- Genus Munromyia Bezzi, 1922
- Genus Myioleja Shiraki, 1933 accepted as Myoleja Rondani, 1856
- Genus Myiolia Hendel in Lindner, 1927 accepted as Myoleja Rondani, 1856
- Genus Myiopardalis Bezzi, 1910 accepted as Carpomya Costa, 1854
- Genus Myiopites
- Genus Mylogymnocarena Foote, 1960
- Genus Myoleja Rondani, 1856
- Genus Myopites Blot, 1827
- Genus Myopitora Korneyev & White, 1991
- Genus Myrmecodacus Munro, 1984
- Genus Namibiocesa Koçak & Kemal, 2009
- Genus Namwambina Munro, 1957
- Genus Neanomoea Hendel, 1914
- Genus Neanomoeba
- Genus Nearomyia Becker, 1912
- Genus Neaspilota Osten-Sacken, 1878
- Genus Nebrodacus Munro, 1984
- Genus Nemeurinus Ito, 1984
- Genus Nemoriludia Ito, 1984
- Genus Neoceratitis Hendel in Lindner, 1927
- Genus Neodacus Perkins, 1937
- Genus Neohexachaeta da Costa Lima, 1953
- Genus Neomyoleja Tseng, Chu & Chen, 1992
- Genus Neomyopites Freidberg & Norrbom, 2000 †
- Genus Neorellia Friedberg & Mathis, 1986
- Genus Neorhabdochaeta Malloch, 1941
- Genus Neorhagoletis Hendel, 1914
- Genus Neortalotrypeta Norrbom, 1994
- Genus Neosophira Hendel, 1914
- Genus Neosphaeniscus Norrbom, 2010
- Genus Neotaracia Foote, 1978
- Genus Neotephritis
- Genus Neothemara Malloch, 1939
- Genus Neozeugodacus May, 1951
- Genus Nesadrama Perkins, 1939 accepted as Diplochorda Osten-Sacken, 1881
- Genus Nesodacus Perkins, 1937
- Genus Nippia Munro, 1929
- Genus Nitobeia Shiraki, 1933
- Genus Nitrariomyia Rodendorf, 1949
- Genus Niuginidacus Drew, 1989 accepted as Bactrocera Macquart, 1835
- Genus Noeeta Robineau-Desvoidy, 1830
- Genus Nonachrostichus Fullaway, 1931 accepted as Monacrostichus Bezzi, 1914
- Genus Nosferatumyia Korneyev & Norrbom, 2006
- Genus Nothoclusiosoma Hardy, 1986
- Genus Notodacus Perkins, 1937
- Genus Notomma Bezzi, 1920
- Genus Notommima Freidberg & Copeland, 2006
- Genus Notommoides Hancock, 1986
- Genus Notophosa Zia, 1964
- Genus Notoxesis Munro, 1947
- Genus Nygmatia Meigen, 1830
- Genus Ochnerus Rondani, 1875 accepted as Ocneros Costa, 1844
- Genus Ochrobapha Munro, 1938
- Genus Ocnerioxa Speiser, 1915
- Genus Ocnerioxyna Séguy, 1939
- Genus Ocneros Costa, 1844
- Genus Odnosumyia Korneyev, 1991 accepted as Euleia Walker, 1835
- Genus Oedaspis Loew, 1862
- Genus Oedaspoides Hendel, 1927
- Genus Oedicarena Loew, 1873
- Genus Oedoncus
- Genus Oligodacus Munro, 1984
- Genus Oplocheta Rondani, 1856 accepted as Noeeta Robineau-Desvoidy, 1830
- Genus Orellia Robineau-Desvoidy, 1830
- Genus Oreurinus Ito, 1984
- Genus Orienticaelum Ito, 1984
- Genus Ornithoschema Meijere, 1914
- Genus Orotava Frey, 1936
- Genus Ortaloptera Edwards, 1915
- Genus Ortalotrypeta Hendel in Lindner, 1927
- Genus Orthocanthoides Friedberg, 1987
- Genus Ostracocoelia Giglio-Tos, 1893
- Genus Othniocera Hardy, 1986
- Genus Oxina Rondani, 1856 accepted as Oxyna Robineau-Desvoidy, 1830
- Genus Oxyaciura Hendel in Lindner, 1927
- Genus Oxyna Robineau-Desvoidy, 1830
- Genus Oxyparna Korneyev, 1990
- Genus Oxyphora Robineau-Desvoidy, 1830
- Genus Pacifodacus Drew, 1972 accepted as Bactrocera Macquart, 1835
- Genus Paedohexacinia Hardy, 1986
- Genus Pangasella Richter, 1995
- Genus Papuadrama Hancock & Drew, 2005
- Genus Papuodacus Drew, 1972 †
- Genus Paraactinoptera Hardy & Drew, 1996
- Genus Paracallantra Hendel, 1927
- Genus Paracantha Coquillett, 1899
- Genus Paracanthella Hendel in Lindner, 1927
- Genus Paracanthonevra Hardy, 1974
- Genus Paracarphotricha Hendel in Lindner, 1927
- Genus Paraceratitella Hardy, 1967
- Genus Parachlaena Hering, 1940
- Genus Paraciura Hering, 1942
- Genus Paraclusiosoma Hardy, 1986
- Genus Paracristobalia Hardy, 1987
- Genus Paradacopsis Hancock, 2014
- Genus Paradacus Perkins, 1938
- Genus Paradesis Hancock, 1986
- Genus Paraeuphranta Hardy, 1959
- Genus Parafreutreta Munro, 1929
- Genus Paragastrozoa
- Genus Paragastrozona Shiraki, 1933
- Genus Parahyalopeza Hardy & Drew, 1996
- Genus Parahypenidium Shiraki, 1933 accepted as Acidostigma Hendel, 1927
- Genus Parahyponidium Shiraki, 1933 accepted as Parahypenidium Shiraki, 1933
- Genus Paralleloptera Bezzi, 1913
- Genus Paramyiolia Shiraki, 1933
- Genus Paranoeeta Shiraki, 1933
- Genus Paranoplomus Shiraki, 1933
- Genus Parapenoxyna Hardy & Drew, 1996 accepted as Peneparoxyna Hardy & Drew, 1996
- Genus Paraphasca Hardy, 1986
- Genus Pararhabdochaeta Hardy, 1985
- Genus Pararibia Shinji, 1940
- Genus Parasinodacus Drew & Romig, 2013 accepted as Bactrocera Macquart, 1835
- Genus Parasophira Hardy, 1980
- Genus Paraspathulina Hardy & Drew, 1996
- Genus Paraspheniscoides Hering, 1941
- Genus Paraspheniscus Hendel in Lindner, 1927
- Genus Parastenopa Hendel, 1914
- Genus Paratephritis Shiraki, 1933
- Genus Paraterellia Foote, 1960
- Genus Paratridacus Shiraki, 1933
- Genus Paratrirhithrum Shiraki, 1933
- Genus Paratrypeta Han & Wang in Han, Wang & Kim, 1994
- Genus Paraxarnuta Hardy, 1973
- Genus Parazeugodacus Shiraki, 1933
- Genus Pardalapsis
- Genus Pardalaspinus Hering, 1952
- Genus Pardalaspis Bezzi, 1918
- Genus Parhexacinia Chen, 1948
- Genus Paroxyna Hendel in Lindner, 1927
- Genus Pediapelta Munro, 1947
- Genus Pelmatops Enderlein, 1912
- Genus Peneparoxyna Hardy & Drew, 1996
- Genus Peratomixis Munro, 1947
- Genus Percnoptera Philippi, 1873
- Genus Perilampsis Bezzi, 1920
- Genus Perirhithrum Bezzi, 1920
- Genus Peronyma Loew, 1873
- Genus Phacelochaeta Norrbom, 2010
- Genus Phaeogramma Grimshaw, 1901
- Genus Phaeospila Bezzi, 1913
- Genus Phaeospilodes Hering, 1939
- Genus Phagocarpus Rondani, 1870 accepted as Anomoia Walker, 1835
- Genus Phantasmiella Hendel, 1914
- Genus Phasca Hering, 1953
- Genus Phasmatocephala Hering, 1937
- Genus Pherothrinax Munro, 1957
- Genus Philophylla Rondani, 1870
- Genus Phobema Aldrich, 1925
- Genus Phorellia Schiner, 1862
- Genus Phorellia Rondani, 1870 accepted as Forellia Robineau-Desvoidy, 1830
- Genus Phorelliosoma Hendel, 1914
- Genus Phytalmia Gerstaecker, 1860
- Genus Phythalmia Schiner, 1868 accepted as Phytalmia Gerstaecker, 1860
- Genus Piestometopon Meijere, 1914
- Genus Pinacochaeta Munro, 1933
- Genus Piocolepis Hancock, 2014
- Genus Pionodacus Munro, 1984
- Genus Placaciura Hendel in Lindner, 1927
- Genus Plagiotoma Loew, 1873 accepted as Tomoplagia Coquillett, 1910
- Genus Platensia
- Genus Platensina Enderlein, 1911
- Genus Platiparea Rondani, 1870 accepted as Platyparea Loew, 1862
- Genus Platomma Bezzi, 1924
- Genus Platyparea Loew, 1862
- Genus Platyparella Hendel, 1914
- Genus Platystomopsis Hering, 1939
- Genus Plaumannimyia Hering, 1938
- Genus Pliomelaena Bezzi, 1918
- Genus Plioreocepta Korneyev, 1987
- Genus Podophysa Hering, 1939
- Genus Poecillis Bezzi, 1913
- Genus Poeciloptera Loew, 1846
- Genus Poecilothea Hendel, 1914
- Genus Pogonangelus Ito, 1984
- Genus Polionota Van der Wulp, 1899
- Genus Polistomimetes Enderlein, 1920
- Genus Polyara Walker, 1859
- Genus Polyaroidea Hardy, 1988
- Genus Polymorphomyia Snow, 1894
- Genus Priomimera Shiraki, 1933
- Genus Prionimera Rondani, 1861 accepted as Acidia Robineau-Desvoidy, 1830
- Genus Pristaciura Hendel, 1928
- Genus Proanoplomus Shiraki, 1933
- Genus Problepharoneura Norrbom & Condon, 2000
- Genus Procecidochares Hendel, 1914
- Genus Procecidocharoides Foote, 1960
- Genus Procedidochares
- Genus Prochetostoma Han, 2006
- Genus Proepacrocerus Hardy, 1988
- Genus Promyopites Korneyev in Korneyev & Merz, 1998
- Genus Proptilona
- Genus Prospheniscus Shiraki, 1933
- Genus Prospilocosmia Shiraki, 1933
- Genus Protensina Hendel, 1914
- Genus Protephritis Shiraki, 1933
- Genus Protortalotrypeta Norrbom, 1994
- Genus Psednometopum Munro, 1937
- Genus Psedonmetopum
- Genus Pseudacanthoneura Malloch, 1939
- Genus Pseudacidia Shiraki, 1933 accepted as Pseudacidia Munro, 1935
- Genus Pseudacidia Munro, 1935
- Genus Pseudacinia Korneyev, 1990 accepted as Campiglossa Rondani, 1870
- Genus Pseudacrotaenia Hendel, 1914
- Genus Pseudacrotoxa Hering, 1941
- Genus Pseudafreutreta Hering, 1942
- Genus Pseudeuleia Hering, 1940
- Genus Pseudeutreta Hendel, 1914
- Genus Pseudhemilea Chen, 1948
- Genus Pseudina Malloch, 1939 accepted as Vidalia Robineau-Desvoidy, 1830
- Genus Pseudoedaspis Hendel, 1914
- Genus Pseudomyoleja Han & Freidberg, 1994
- Genus Pseudoneothemara Hardy, 1986
- Genus Pseudonoeeta Hering, 1942
- Genus Pseudonoeëta Hering, 1942 accepted as Pseudonoeeta Hering, 1942
- Genus Pseudopelmatops Shiraki, 1933
- Genus Pseudopheniscus Hendel, 1913 accepted as Sphaeniscus Becker, 1908
- Genus Pseudophorellia da Costa Lima, 1934
- Genus Pseudopolionota da Costa Lima, 1935
- Genus Pseudorellia Shiraki, 1933
- Genus Pseudosophira Malloch, 1939
- Genus Pseudospheniscus Hendel, 1914 accepted as Sphaeniscus Becker, 1908
- Genus Pseudovidalia Han, 2012
- Genus Psilodacus Collart, 1935
- Genus Pterandrus Bezzi, 1918
- Genus Pterochile Richter & Kandybina, 1981 accepted as Euleia Walker, 1835
- Genus Pterope Munro, 1957
- Genus Ptiloedaspis Bezzi, 1920
- Genus Ptilona Van der Wulp, 1880
- Genus Ptilonina Enderlein, 1911
- Genus Ptiloniola Hendel, 1914
- Genus Ptosanthus Munro, 1957
- Genus Pycnella Munro, 1947
- Genus Pycnodacus Munro, 1984
- Genus Pyrgotoides Curran, 1934
- Genus Quadrimelaena Hancock, 2004
- Genus Quasicooronga Hardy & Drew, 1996
- Genus Quasirhabdochaeta Hardy, 1986
- Genus Queenslandacus Drew, 1989
- Genus Rabaulia Malloch, 1939
- Genus Rabauliomorpha Hardy, 1970
- Genus Rachiptera Bigot, 1859
- Genus Ragoletis Loew, 1862 accepted as Rhagoletis Loew, 1862
- Genus Rhabdochaeta Meijere, 1904
- Genus Rhachiptera Verrall in Scudder, 1882 accepted as Rachiptera Bigot, 1859
- Genus Rhacochlaena Loew, 1862
- Genus Rhacoclaena
- Genus Rhagoletis Loew, 1862
- Genus Rhagoletoides Foote, 1960
- Genus Rhagoletotrypeta Aczél, 1951
- Genus Rhaibophleps Hardy, 1973
- Genus Rhamphodacus Munro, 1984
- Genus Rhithrum Hendel, 1914
- Genus Rhochmopterum Speiser in Sjöstedt, 1910
- Genus Rhyncheterus Rondani, 1863 accepted as Myopites Blot, 1827
- Genus Rhynchoedaspis Bezzi, 1924
- Genus Rhynencina Johnson, 1922
- Genus Rioxa Walker, 1856
- Genus Rioxina Hering, 1941
- Genus Rioxoptilona Hendel, 1914
- Genus Rivelliomima Bezzi, 1924
- Genus Robertsomyia Hardy, 1983
- Genus Saccodacus Munro, 1984
- Genus Sapadrama Hancock & Marshall, 2012
- Genus Satacola
- Genus Saucromyia Hardy, 1986
- Genus Scedella Munro, 1957
- Genus Schistopterum Becker, 1903
- Genus Schistotephritis Freidberg, 2002
- Genus Scleropithus Munro, 1939
- Genus Scolocolus Hardy, 1970
- Genus Scriptotricha Cockerell, 1893
- Genus Semicallantra Drew, 1989
- Genus Seraca Walker, 1860
- Genus Serpentinographa Aczél, 1951
- Genus Sessilina McAlpine & Schneider, 1978
- Genus Setigeresta Benjamin, 1934 accepted as Euaresta Loew, 1873
- Genus Setoides Zonstein & Freidberg, 2006
- Genus Setosigena Stoltzfus, 1977
- Genus Shiracidia Ito, 1984
- Genus Shunraia Ito, 1984
- Genus Sinacidia Chen, 1948
- Genus Sinaida Hering, 1940 accepted as Vidalia Robineau-Desvoidy, 1830
- Genus Sinanoplomus
- Genus Sineuleia Chen, 1948
- Genus Sinevra Lioy, 1864 accepted as Sphenella Robineau-Desvoidy, 1830
- Genus Sinodacus
- Genus Sinotephritis Chen, 1938
- Genus Sinoxyna Chen, 1938
- Genus Sitarea Robineau-Desvoidy, 1830 accepted as Orellia Robineau-Desvoidy, 1830
- Genus Sitaria Loew, 1862 accepted as Sitarea Robineau-Desvoidy, 1830
- Genus Siticola Hering, 1947
- Genus Soita Walker, 1865
- Genus Sophira Walker, 1856
- Genus Sophiroides Hendel, 1914
- Genus Sophiroïdes Hendel, 1914 accepted as Sophiroides Hendel, 1914
- Genus Sophiropsis Hardy, 1986
- Genus Soraida Hering, 1941
- Genus Sosiopsila Bezzi, 1920
- Genus Spaniothrix Hardy, 1973
- Genus Spathulina Rondani, 1856
- Genus Sphaeniscus Becker, 1908
- Genus Sphenella Robineau-Desvoidy, 1830
- Genus Spheniscomyia Bezzi, 1913
- Genus Spheniscus Bezzi, 1913 accepted as Sphaeniscus Becker, 1908
- Genus Spilocosmia Bezzi, 1914
- Genus Spilographa Loew, 1862
- Genus Spinicosta Freidberg & Norrbom, 2000 †
- Genus Spylographa Rondani, 1871 accepted as Spilographa Loew, 1862
- Genus Squamensina Hering, 1938
- Genus Stamnophora Munro, 1956
- Genus Staurella Bezzi, 1913
- Genus Staurellina Hering, 1940
- Genus Staurocneros Hering, 1944 accepted as Coelotrypes Bezzi, 1924
- Genus Stelladesis Merz, 2000 †
- Genus Stemonocera Rondani, 1870
- Genus Stenopa Loew, 1873
- Genus Stenotrypeta Enderlein, 1920
- Genus Stephanaciura Séguy, 1930
- Genus Stephanotrypeta Hendel, 1931
- Genus Stictaspis Bezzi, 1913
- Genus Stigmatomyia Hardy, 1986
- Genus Stigmatothemara Enderlein, 1920
- Genus Stoneola Hering, 1941
- Genus Straussia Loew, 1873 accepted as Strauzia Robineau-Desvoidy, 1830
- Genus Straussia Agassiz, 1846 accepted as Strauzia Robineau-Desvoidy, 1830
- Genus Strauzia Robineau-Desvoidy, 1830
- Genus Straxissia Verrall in Scudder, 1882 accepted as Strauzia Robineau-Desvoidy, 1830
- Genus Strobelia Rondani, 1868
- Genus Strumeta Walker, 1856
- Genus Stuarella
- Genus Stylia Robineau-Desvoidy, 1830
- Genus Stymbara Walker, 1865
- Genus Sundaresta Hering, 1953
- Genus Syusiroitoa Kwon, 1985
- Genus Taeniorioxa Permkam & Hancock, 1995
- Genus Taeniostola Bezzi, 1913
- Genus Tanaica Munro, 1957
- Genus Tanaodema Hardy, 1987
- Genus Tanaosema Munro, 1947
- Genus Tanymetopus Hardy, 1982
- Genus Tanzanimyia Freidberg, Zonstein & Friedman, 2020
- Genus Taomyia Bezzi, 1920
- Genus Tarchonanthea Freidberg & Kaplan, 1993
- Genus Tarphobregma Hardy, 1987
- Genus Telaletes Munro, 1938
- Genus Tephraciura Hering, 1941
- Genus Tephrelalis Korneyev, 1993
- Genus Tephrella Bezzi, 1913
- Genus Tephrites Gray, 1832 accepted as Tephritis Latreille, 1804
- Genus Tephritis Latreille, 1804
- Genus Tephritites Freidberg, 1979
- Genus Tephritoedaspis Rohdendorf, 1934
- Genus Tephritoides Benjamin, 1934 accepted as Tephritis Latreille, 1804
- Genus Tephritomyia Hendel in Lindner, 1927
- Genus Tephritoresta Hering, 1942
- Genus Tephrodesis Merz, 2000 †
- Genus Tephrostola Bezzi, 1913 accepted as Platensina Enderlein, 1911
- Genus Tephrytis Robineau-Desvoidy, 1830 accepted as Tephritis Latreille, 1804
- Genus Terastiomyia Bigot, 1859
- Genus Terastomyia Loew, 1873 accepted as Terastiomyia Bigot, 1859
- Genus Terbita Bassov & Tolstoguzova, 1994 accepted as Tephritis Latreille, 1804
- Genus Terellia Robineau-Desvoidy, 1830
- Genus Teriastiomyia Schiner, 1868 accepted as Terastiomyia Bigot, 1859
- Genus Termitorioxa Hendel, 1928
- Genus Terpnodesma Munro, 1956
- Genus Tetraciura Hendel, 1914
- Genus Tetrameringophrys Hardy, 1973
- Genus Tetramyiolia Shiraki, 1933
- Genus Tetrastiomyia Malloch, 1930 accepted as Terastiomyia Bigot, 1859
- Genus Tetreuaresta Hendel, 1928
- Genus Themara Walker, 1856
- Genus Themarictera Hendel, 1914
- Genus Themarohystrix Hendel, 1914
- Genus Themaroides Hendel, 1914
- Genus Themaroidopsis Hering, 1941
- Genus Thephritis Wiedemann, 1828 accepted as Tephritis Latreille, 1804
- Genus Timiodacus Munro, 1984
- Genus Tomoplagia Coquillett, 1910
- Genus Tomoplagina Curran, 1932
- Genus Tomoplagiodes Aczél, 1954
- Genus Toxotrypana Gerstaecker, 1860
- Genus Toxotrypanea Curran, 1934 accepted as Toxotrypana Gerstaecker, 1860
- Genus Triandomelaena Hancock, 1986
- Genus Trichoterellia Hendel in Lindner, 1927
- Genus Tridacus Bezzi, 1915
- Genus Trigonochorium Becker, 1912
- Genus Tripanea
- Genus Tripeta Rondani, 1870 accepted as Trypeta Meigen, 1803
- Genus Trirhithromyia Hendel, 1931
- Genus Trirhithrum Bezzi, 1918
- Genus Tritaeniopteron de Meijere, 1914
- Genus Trupanea Macquart, 1838
- Genus Trupanodesis Merz, 2000 †
- Genus Trypanaresta Hering, 1940
- Genus Trypanea Agassiz, 1846
- Genus Trypanocentra Hendel, 1914
- Genus Trypanoidea Bryan, 1924 accepted as Trupanea Macquart, 1838
- Genus Trypanophion Bezzi, 1924
- Genus Trypeta Meigen, 1803
- Genus Trypetidacus Drew, 1989
- Genus Tylaspis Munro, 1935
- Genus Tyrpeta Giebel, 1852 accepted as Trypeta Meigen, 1803
- Genus Tythocalama Munro, 1984
- Genus Udamolobium Hardy, 1982
- Genus Uncaculeus Stoltzfus, 1977
- Genus Urellia Robineau-Desvoidy, 1830 accepted as Trupanea Macquart, 1838
- Genus Urelliosoma Hendel in Lindner, 1927
- Genus Urophora Robineau-Desvoidy, 1830
- Genus Valentibulla Foote & Blanc, 1959
- Genus Vidalia Robineau-Desvoidy, 1830
- Genus Walkeraitia Hardy, 1986
- Genus Westermannia Lioy, 1864
- Genus Wheteina Korneyev, 1990 accepted as Campiglossa Rondani, 1870
- Genus Whiteina Korneyev, 1990
- Genus Whitterellia Basov & Nartshuk, 1996
- Genus Xaniosternum Enderlein, 1920
- Genus Xanthaciura Hendel, 1914
- Species Xanthaciura aczeli Foote, 1982
- Species Xanthaciura brevinervis Malloch, 1933 accepted as Xanthaciura connexionis Benjamin, 1934
- Species Xanthaciura connexionis Benjamin, 1934
- Species Xanthaciura excelsa Aczel, 1950
- Species Xanthaciura flavicauda Aczel, 1952
- Species Xanthaciura major Malloch, 1934
- Species Xanthaciura mallochi Aczel, 1950
- Species Xanthaciura speciosa Hendel, 1914
- Species Xanthaciura specioso Aczel, 1950 accepted as Xanthaciura speciosa Hendel, 1914
- Species Xanthaciura stonei Aczel, 1952
- Species Xanthaciura thetis Hendel, 1914
- Species Xanthaciura unipuncta Malloch, 1933
- Genus Xanthanomoea Bezzi, 1924
- Genus Xanthomyia Phillips, 1923
- Genus Xanthorrachis Bezzi, 1913
- Genus Xanthorrachista Hendel, 1914
- Genus Xanthotrypeta Malloch, 1939
- Genus Xarnuta Walker, 1856
- Genus Xenadorella
- Genus Xenochaeta Snow, 1894 accepted as Acidogona Loew, 1873
- Genus Xenodorella Munro, 1967
- Genus Xenosophira Hardy, 1980
- Genus Xylenodacus Munro, 1984
- Genus Xyphosia Robineau-Desvoidy, 1830
- Genus Yamanowotome Ito, 1984
- Genus Ypsilomena Munro, 1947
- Genus Yunacantha Zia, 1963
- Genus Zacerata Coquillett, 1924
- Genus Zeugodacus Hendel in Lindner, 1927
- Genus Zonosema Loew, 1862
- Genus Zonosemata Benjamin, 1934
- Family Teratomyzidae Colless & McAlpine, 1970
- Family Tethepomyiidae Grimaldi & Arillo, 2008 †
- Family Tethinidae accepted as Canacidae Jones, 1906
- Family Thaumaleidae Bezzi, 1913
- Family Therevidae Newman, 1834
- Family Tillyardipteridae Lukashevich & Shcherbakov, 1999 †
- Family Tipulidae Leach, 1815
- Family Tipulodictyidae Rohdendorf, 1962 †
- Family Tipulopleciidae Rohdendorf, 1962 †
- Family Trichoceridae Rondani, 1841
- Family Trixoscelidae Hendel, 1916 accepted as Heleomyzidae Westwood, 1840
- Family Trypetidae Loew, 1861 accepted as Tephritidae Newman, 1834
- Family Ulidiidae Macquart, 1835
- Family Ulurumyiidae Michelsen & Pape, 2017
- Family Uranorhagionidae Zhang, Yang & Ren, 2010 †
- Family Valeseguyidae Amorim & Grimaldi, 2006
- Family Vermileonidae Williston, 1886
- Family Vladipteridae Shcherbakov, 1995 †
- Family Vosilidae Vršanský & Ren in Vršanský, Ren & Shih, 2010 †
- Family Xenasteiidae Hardy, 1980
- Family Xylomidae accepted as Xylomyidae Verrall, 1901
- Family Xylomyidae Verrall, 1901
- Family Xylophagidae Fallén, 1810
- Family Yantaromyiidae Barták, 2020 †
- Family Zhangobiidae Evenhuis, 1994 † accepted as Pediciidae Osten Sacken, 1860
- Family Zhangsolvidae Nagatomi & Yang, 1998 †
- Genus Apystomimus Mostovski, 1999 †
- Genus Aschizomyia Grimaldi, 2018 †
- Order Embiodea
- Order Endopterygota incertae sedis
- Order Eoblattida †
- Order Ephemeroptera
- Order Eugeroptera †
- Order Geraroptera †
- Order Geroptera †
- Order Glosselytrodea †
- Order Grylloblattodea
- Order Hemiptera
- Order Homoptera accepted as Hemiptera
- Order Hymenoptera
- Order Hypoperlida †
- Order Insecta (awaiting allocation)
- Order Insecta incertae sedis
- Order Isoptera accepted as Blattodea
- Order Kukaloptera †
- Order Lepidoptera
- Order Lophioneurida †
- Order Mallophaga
- Order Mantodea
- Order Mantophasmatodea
- Order Mecoptera
- Order Mecopterida incertae sedis
- Order Megaloptera
- Order Megasecoptera †
- Order Miomoptera †
- Order Neoptera incertae sedis
- Order Neuroptera
- Order Neuropteroidea incertae sedis †
- Order Notoptera
- Order Odonata
- Order Odonatoptera (awaiting allocation) †
- Order Odonatoptera incertae sedis
- Order Orthoptera
- Order Orthopterida incertae sedis
- Order Palaeodictyoptera †
- Order Palaeoptera incertae sedis
- Order Panorthoptera incertae sedis
- Order Paoliida †
- Order Paraneoptera (awaiting allocation)
- Order Perielytrodea †
- Order Permopsocida †
- Order Permotrichoptera †
- Order Phasmatodea
- Order Phasmida accepted as Phasmatodea
- Order Phasmoptera accepted as Phasmatodea
- Order Phthiraptera
- Order Plecoptera
- Order Polyneoptera incertae sedis
- Order Protelytroptera †
- Order Protoblattoidea †
- Order Protocoleoptera † accepted as Protelytroptera †
- Order Protodonata †
- Order Protoelytroptera †
- Order Protohemiptera †
- Order Protohymenoptera †
- Order Protorthoptera †
- Order Protozygoptera †
- Order Psocoptera
- Order Raphidioptera
- Order Siphonaptera
- Order Skleroptera †
- Order Strepsiptera
- Order Tarachoptera †
- Order Thripida incertae sedis
- Order Thysanoptera
- Order Thysanura accepted as Insecta
- Order Titanoptera †
- Order Trichoptera
- Order Zoraptera
- Order Zygentoma
- Genus Bifarius Tasch, 1961 †
- Genus Cyclocephalus Tasch, 1961 †
- Genus Hypatocephala Tasch, 1961 †
- Genus Permolimulinella Tasch, 1963 †
- Genus Strongylocephalus Tasch, 1961 †
- Class Protura
- Subphylum Myriapoda
- Subphylum Trilobitomorpha †
- Class Arachnomorpha (awaiting allocation)
- Class Arthropoda (awaiting allocation)
- Class Artiopoda †
- Class Crustaceomorpha incertae sedis †
- Class Dinocaridida †
- Class Labrophora incertae sedis
- Class Lamellipedia incertae sedis
- Class Megacheira †
- Class Thylacocephala †
- Class Xenocarida incertae sedis
- Order Canadaspidida † accepted as Hymenocarina †
- Order Cheloniellida †
- Order Emeraldellida † accepted as Arthropoda
- Order Fuxianhuiida †
- Order Habeliida †
- Order Hymenocarina †
- Order Isoxyida †
- Order Pectocaridida † accepted as Hymenocarina †
- Order Waptiida † accepted as Hymenocarina †
- Family Bomakellidae Fedonkin, 1987 †
- Family Burgessiidae Walcott, 1912 †
- Family Emeraldellidae Raymond, 1935 †
- Family Guangweicarididae Luo, Fu, Hu, Li, Hou, You, Pang & Liu, 2007 †
- Genus Aaveqaspis Peel & Stein, 2009 †
- Genus Acheronauta Pulsipher, Anderson, Wright, Kluessendorf, Mikulic & Schiffbauer, 2022 †
- Genus Arthroaspis Stein, Budd, Peel & Harper, 2013 †
- Genus Astutuscaris Jiao & Du, 2022 †
- Genus Bennettarthra Fayers, Trewin & Morrissey, 2010 †
- Genus Bushizheia O'Flynn & Liu in O'Flynn et al., 2020 †
- Genus Chuandianella Hou & Bergström, 1991 †
- Genus Dioxycaris Gürich, 1929 †
- Genus Dongshanocaris Hou, Bergström, Wang, Feng & Chen, 1999 †
- Genus Duraznovis Lara, Cariglino & Zavattieri in Lara et al., 2019 †
- Genus Duraznovs Lara, Cariglino & Zavattieri in Lara et al., 2019 † accepted as Duraznovis Lara, Cariglino & Zavattieri in Lara et al., 2019 †
- Genus Esmeraldacaris Waggoner, 2003 †
- Genus Fibulacaris Izquierdo-López & Caron, 2019 †
- Genus Kiisortoqia Stein, 2010 †
- Genus Kylinxia Zeng, Zhao, Niu, Zhu & Huang, 2020 †
- Genus Lihuacaris Jiao, Pates, Lerosey-Aubril, Ortega-Hernández, Yang, Lan & Zhang, 2021 †
- Genus Norikeya Tanaka, Siveter & Williams, 2013 †
- Genus Nothozoe Barrande, 1872 †
- Genus Nothozoe Barrande in Bigsby, 1868 † accepted as Nothozoe Barrande, 1872 †
- Genus Notozoe Zittel, 1885 † accepted as Nothozoe Barrande, 1872 †
- Genus Pakucaris Izquierdo-López & Caron, 2021 †
- Genus Pambdelurion Budd, 1998 †
- Genus Parvibellus Liu, Dunlop, Steiner & Shu, 2022 †
- Genus Pleuralata McCoy, Strother & Briggs, 2012 †
- Genus Pseudoangustidontus Van Roy & Tetlie, 2006 †
- Genus Pteroessa Hudson & Gosse, 1886
- Genus Sidneyia Walcott, 1911 †
- Genus Siriocaris Lagebro, Stein & Peel, 2009 †
- Genus Vermontcaris Pari, Briggs & Gaines, 2022 †
- Genus Youti Smith, Long, Dhungana, Dobson, Yang & Zhang, 2024 †
- Phylum Brachiopoda
- Phylum Bryozoa
- Phylum Cephalorhyncha incertae sedis
- Phylum Chaetognatha
- Phylum Chitinozoa †
- Phylum Chordata
- Phylum Cnidaria
- Phylum Ctenophora
- Phylum Cycliophora
- Phylum Cycloneuralia incertae sedis
- Phylum Ecdysozoa incertae sedis †
- Phylum Echinodermata
- Phylum Entoprocta
- Phylum Gastrotricha
- Phylum Gnathostomulida
- Phylum Hemichordata
- Phylum Hyolitha †
- Phylum Kinorhyncha
- Phylum Lobopoda †
- Phylum Loricifera
- Phylum Micrognathozoa
- Phylum Mollusca
- Phylum Monoblastozoa accepted as Animalia incertae sedis
- Phylum Nematoda
- Phylum Nematomorpha
- Phylum Nemertea
- Phylum Onychophora
- Phylum Orthonectida
- Phylum Phoronida
- Phylum Placozoa
- Phylum Platyhelminthes
- Phylum Pogonophora accepted as Siboglinidae Caullery, 1914
- Phylum Porifera
- Phylum Priapula accepted as Priapulida
- Phylum Priapulida
- Phylum Problematica † accepted as Animalia incertae sedis
- Phylum Rhombozoa
- Phylum Rotifera
- Phylum Scalidophora incertae sedis
- Phylum Sipuncula
- Phylum Tardigrada
- Phylum Trace fossils †
- Phylum Vendobionta †
- Phylum Vestimentifera accepted as Siboglinidae Caullery, 1914
- Phylum Vetulicolia †
- Phylum Vinctiplicata incertae sedis †
- Phylum Xenacoelomorpha
- Genus Trilobocaris Pribyl, 1953 †
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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