Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Phylum Acanthocephala
- Phylum Agmata †
- Phylum Animalia (awaiting allocation)
- Phylum Animalia incertae sedis
- Phylum Annelida
- Phylum Arthropoda
- Phylum Brachiopoda
- Phylum Bryozoa
- Phylum Cephalorhyncha incertae sedis
- Phylum Chaetognatha
- Phylum Chitinozoa †
- Phylum Chordata
- Phylum Cnidaria
- Phylum Ctenophora
- Phylum Cycliophora
- Phylum Cycloneuralia incertae sedis
- Phylum Ecdysozoa incertae sedis †
- Phylum Echinodermata
- Phylum Entoprocta
- Phylum Gastrotricha
- Phylum Gnathostomulida
- Phylum Hemichordata
- Phylum Hyolitha †
- Phylum Kinorhyncha
- Phylum Lobopoda †
- Phylum Loricifera
- Phylum Micrognathozoa
- Phylum Mollusca
- Phylum Monoblastozoa accepted as Animalia incertae sedis
- Phylum Nematoda
- Phylum Nematomorpha
- Phylum Nemertea
- Phylum Onychophora
- Phylum Orthonectida
- Phylum Phoronida
- Phylum Placozoa
- Phylum Platyhelminthes
- Class Cestoda
- Class Platyhelminthes (awaiting allocation)
- Class Platyhelminthes incertae sedis
- Class Trematoda
- Order Aspidogastrea (awaiting allocation)
- Order Aspidogastrida
- Order Azygiida
- Order Capsalidea
- Order Chimaericolidea
- Order Dactylogyrida (awaiting allocation)
- Order Dactylogyridea
- Order Diclybothriidea
- Order Digenea (awaiting allocation)
- Order Digenea incertae sedis
- Order Diplostomida
- Order Echinostomida
- Order Fasciolatoidea
- Order Gymnophalloidea (awaiting allocation)
- Order Gyrodactylidea
- Order Hemiuroidea (awaiting allocation)
- Order Lepocreadioidea (awaiting allocation)
- Order Mazocraeidea
- Family Allomicrocotylidae Yamaguti, 1965 accepted as Allopyragraphoridae Yamaguti, 1953
- Family Allopyragraphoridae Yamaguti, 1953
- Family Anchorophoridae Bychowsky & Nagibina, 1958
- Family Anthocotylidae Bychowsky, 1957 accepted as Discocotylidae Price, 1936
- Family Axinidae Monticelli, 1903
- Family Bicotylophoridae Amato, 1994 accepted as Discocotylidae Price, 1936
- Family Bychowskicotylidae Lebedev, 1969
- Family Cemocotylidae Yamaguti, 1963 accepted as Heteraxinidae Unnithan, 1957
- Family Chauhaneidae Euzet & Trilles, 1960
- Family Dactylocotylidae Brinkmann, 1942 accepted as Diclidophoridae Fuhrmann, 1928
- Family Diclidophoridae Fuhrmann, 1928
- Family Diplozoidae Palombi, 1949
- Family Discocotylidae Price, 1936
- Family Gastrocotylidae Price, 1943
- Family Gotocotylidae Yamaguti, 1963
- Family Heteraxinidae Unnithan, 1957
- Family Heteromicrocotylidae Unnithan, 1961
- Family Hexastomatidae accepted as Hexostomatidae Price, 1936
- Family Hexostomatidae Price, 1936
- Family Macrovalvitrematidae Yamaguti, 1963
- Family Mazocraeidae Price, 1936
- Family Mazoplectidae Mamaev & Slipchenko, 1975
- Family Megalonchidae accepted as Diclidophoridae Fuhrmann, 1928
- Family Megaloncidae Yamaguti, 1958 accepted as Diclidophoridae Fuhrmann, 1928
- Family Megamicrocotylidae Mamaev, 1990
- Family Microcotylidae Taschenberg, 1879
- Genus Anakohnia Bravo-Hollis, 1986
- Genus Anchoromicrocotyle Bravo-Hollis, 1981
- Genus Aspinatrium Yamaguti, 1963
- Genus Atriaster Lebedev & Parukhin, 1969
- Genus Atriostella Unnithan, 1971
- Genus Atrispinum Euzet & Maillard, 1974
- Genus Axinella Lebedev & Parukhin, 1969 accepted as Caballeraxine Lebedev, 1972
- Genus Bilateracotyle Chauhan, 1945
- Genus Bivagina Yamaguti, 1963
- Genus Bivaginuda Unnithan, 1971
- Genus Bradyhaptorus Unnithan, 1971 accepted as Pauciconfibula Dillon & Hargis, 1965
- Genus Bychowskicotyla Unnithan, 1971
- Genus Bychowskicotyle Unnithan, 1971 accepted as Bychowskicotyla Unnithan, 1971
- Genus Caballeraxine Lebedev, 1972
- Genus Caenomicrocotyle Unnithan, 1971 accepted as Microcotyle van Beneden & Hesse, 1863
- Genus Cynoscionicola Price, 1962
- Genus Diplasiocotyle Sandars, 1944
- Genus Diplostamenides Unnithan, 1971
- Genus Diurix Unnithan, 1971
- Genus Gamacallum Unnithan, 1971
- Genus Gammacallum Unnithan, 1971
- Genus Heterapta Unnithan, 1961
- Genus Incisaxine Mamaev in Oshmarin, Mamaev & Lebedev, 1970
- Genus Intracotyle Mamaev in Oshmarin, Mamaev & Lebedev, 1970
- Genus Jaliscia Mamaev & Egorova, 1977
- Genus Kahawaia Lebedev, 1969
- Genus Ktarius Hamdi, Benmansour, Ahmed, Gulsher & Bouguerche, 2024
- Genus Lutianicola Lebedev in Oshmarin, Mamaev & Lebedev, 1970
- Genus Magniexcipula Bravo-Hollis, 1981
- Genus Mantarella Unnithan, 1971
- Genus Manterella Unnithan, 1971 accepted as Cynoscionicola Price, 1962
- Genus Metamicrocotyla Yamaguti, 1952
- Genus Microcotyle van Beneden & Hesse, 1863
- Genus Microcotyloides Fujii, 1940
- Genus Monomacracanthus Mamaev, 1976
- Genus Neobivagina Dillon & Hargis, 1965
- Genus Neobivaginopsis Villalba, 1987
- Genus Omanicotyle Yoon, Al-Jufaili, Freeman, Bron, Paladini & Shinn, 2013
- Genus Pagellicotyle Mamaev, 1984 accepted as Bychowskicotyla Unnithan, 1971
- Genus Paracaesicola Zhou, Li, Liu, Ding & Yuan, 2020
- Genus Paramicrocotyle Caballero & Bravo-Hollis, 1972
- Genus Paramicrocotyloides Rohde, 1978
- Genus Paranaella Kohn, Baptista-Farias & Cohen, 2000
- Genus Pauciconfibula Dillon & Hargis, 1965
- Genus Pauciconfibuloides de Aguiar, Domingues, Silva, Ceccarelli, Adriano & Soares, 2022
- Genus Polylabris Euzet & Cauwet, 1967
- Genus Polylabroides Mamaev & Parukhin, 1976
- Genus Polymicrocotyle Lamothe-Argumedo, 1967
- Genus Polynemicola Unnithan, 1971
- Genus Prosomicrocotyla Yamaguti, 1958
- Genus Prostatomicrocotyla Yamaguti, 1968 accepted as Polylabris Euzet & Cauwet, 1967
- Genus Pseudoaspinatrium Mamaev, 1986
- Genus Pseudobivagina Mamaev, 1986
- Genus Rhinecotyle Euzet & Trilles, 1960
- Genus Sciaenocotyle Mamaev, 1989
- Genus Sebasticotyle Mamaev & Egorova, 1977
- Genus Serranicotyle Maillard, Euzet & Silan, 1988
- Genus Solostamenides Unnithan, 1971
- Genus Sparicotyle Mamaev, 1984
- Genus Syncoelicotyle Mamaev & Zubchenko, 1978
- Genus Syncoelicotyloides Mamaev & Brashovian, 1989
- Genus Tinrovia Mamaev, 1987
- Genus Tonkinaxine Lebedev, Parukhin & Roitman, 1970
- Genus Tripathia Yamaguti, 1963 accepted as Heterapta Unnithan, 1961
- Genus Tripathiana Unnithan, 1971
- Genus Vulvostella Unnithan, 1971
- Genus Yogendrotrema Kumar & Agarwal, 1983
- Species Yogendrotrema rajghati Kumar & Agrawal, 1983
- Family Monaxinoididae Mamaev, 1990
- Family Octolabeidae Yamaguti, 1963
- Family Paramonaxinidae Mamaev, 1990
- Family Plectanocotylidae Monticelli, 1903
- Family Protomicrocotylidae Johnston & Tiegs, 1922
- Family Pseudodiclidophoridae Yamaguti, 1965
- Family Pterinotrematidae Bychowsky & Nagibina, 1959
- Family Pyragraphoridae Yamaguti, 1963
- Order Monocotylidea
- Order Monogenea (awaiting allocation)
- Order Monopisthocotylea (awaiting allocation)
- Order Montchadskyellidea
- Order Opisthorchiida
- Order Paramphistomoidea (awaiting allocation)
- Order Plagiorchiida
- Order Polyopisthocotylea
- Order Polyopisthocotylea (awaiting allocation)
- Order Polystomatidea
- Order Stichocotylida
- Order Strigeidida
- Order Trematoda (awaiting allocation)
- Order Trematoda incertae sedis
- Order Zoogonoidea (awaiting allocation)
- Genus Kunckelia Künstler, 1881
- Genus Künckelia Künstler, 1881 accepted as Kunckelia Künstler, 1881
- Class Turbellaria
- Phylum Pogonophora accepted as Siboglinidae Caullery, 1914
- Phylum Porifera
- Phylum Priapula accepted as Priapulida
- Phylum Priapulida
- Phylum Problematica † accepted as Animalia incertae sedis
- Phylum Rhombozoa
- Phylum Rotifera
- Phylum Scalidophora incertae sedis
- Phylum Sipuncula
- Phylum Tardigrada
- Phylum Trace fossils †
- Phylum Vendobionta †
- Phylum Vestimentifera accepted as Siboglinidae Caullery, 1914
- Phylum Vetulicolia †
- Phylum Vinctiplicata incertae sedis †
- Phylum Xenacoelomorpha
- Genus Trilobocaris Pribyl, 1953 †
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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