Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Order Acarosporales
- Order Agyriales
- Order Baeomycetales
- Order Candelariales
- Order Lecanorales
- Family Alectoriaceae accepted as Parmeliaceae Zenker, 1827
- Family Anziaceae accepted as Parmeliaceae Zenker, 1827
- Family Aphanopsidaceae
- Family Arctomiaceae
- Family Bacidiaceae accepted as Ramalinaceae C.A. Agardh, 1821
- Family Biatorellaceae
- Family Brigantiaceae accepted as Brigantiaeaceae
- Family Brigantiaeaceae
- Family Byssolomataceae Zahlbruckner, 1926
- Family Calycidiaceae
- Family Carbonicolaceae M. Bendiksby & E. Timdal, 2013
- Family Cladoniaceae
- Family Crocyniaceae
- Family Dactylosporaceae
- Family Ectolechiaceae
- Family Gypsoplacaceae
- Family Haematommataceae
- Family Helocarpaceae
- Family Heterodeaceae accepted as Cladoniaceae
- Family Hymeneliaceae G.W. Körber, 1855
- Family Lecanoraceae G.W. Körber, 1855
- Family Lecanorales incertae sedis
- Family Malmideaceae K. Kalb, E. Rivas Plata & H.T. Lumbsch in Kalb, Rivas Plata, Lücking & Lumbsch, 2011
- Family Megalariaceae
- Family Miltideaceae
- Family Mycoblastaceae
- Family Parmeliaceae Zenker, 1827
- Family Pilocarpaceae Zahlbruckner, 1905
- Family Ramalinaceae C.A. Agardh, 1821
- Family Sphaerophoraceae
- Family Stereocaulaceae
- Genus Amphiloma Nylander, 1855 accepted as Lepraria Acharius, 1803
- Genus Cereolus (Körber) Boistel, 1903 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Chlorocaulum Clements, 1909 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Conia Ventenat, 1799 accepted as Lepraria Acharius, 1803
- Genus Coralloides G.F. Hoffmann, 1789 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Corynophoron Nylander ex J. Müller Arg., 1894 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Epinyctis C.F. Wallroth, 1831 accepted as Lepraria Acharius, 1803
- Genus Gymnocaulon P.A. Duvigneaud, 1956 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Hertelidea Printzen & Kantvilas, 2004
- Genus Lachnocaulon Clements & Shear, 1931 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Lecanocaulon Nylander, 1860 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Lepraria Acharius, 1803
- Species Lepraria aeruginosa sensu auct. brit.p.p. accepted as Lepraria lobificans Nyl., 1873
- Species Lepraria alba (Gmelin) Acharius
- Species Lepraria angardiana Øvstedal, 1983 accepted as Lepraria cacuminum (A. Massal.) Kümmerl. & Leuckert, 1995
- Species Lepraria antiquitatis (Linné) Acharius
- Species Lepraria argena Acharius, 1798 accepted as Phlyctis argena (Ach.) Flot., 1850
- Species Lepraria atlantica Orange, 2001
- Species Lepraria atra Acharius
- Species Lepraria aurea (Linné) Acharius
- Species Lepraria bassiae Acharius
- Species Lepraria borealis Loht. & Tønsberg, 1994
- Species Lepraria botryoides (Linnaeus) Acharius, 1798 accepted as Omphalina ericetorum (Bull.) M. Lange, 1955
- Species Lepraria byssoidea (Flörke) Acharius
- Species Lepraria byssoides
- Species Lepraria cacuminum (A. Massal.) Kümmerl. & Leuckert, 1995
- Species Lepraria caesia Acharius, 1810 accepted as Placynthium garovaglii (A. Massal.) Malme, 1918
- Species Lepraria caesioalba (de Lesd.) J.R. Laundon, 1992
- Species Lepraria caesio-cinereo Persoon
- Species Lepraria candelaria (L.) Fr. accepted as Chrysothrix candelaris (L.) J.R. Laundon, 1981
- Species Lepraria candelaris (L.) Fr., 1824 accepted as Chrysothrix candelaris (L.) J.R. Laundon, 1981
- Species Lepraria chlorina (Acharius) Acharius, 1798 accepted as Chrysothrix chlorina (Ach.) J.R. Laundon, 1981
- Species Lepraria cinereo-sulphurea Flörke
- Species Lepraria cobaltiginea (Wulfen) Acharius
- Species Lepraria coccodes Acharius
- Species Lepraria cochleatum (Dicks.) anon. accepted as Leptogium cochleatum (Dicks.) P.M. Jørg. & P. James, 1983
- Species Lepraria crassissima sensu auct. brit.p. max. p accepted as Lepraria nivalis J.R. Laundon, 1992
- Species Lepraria crassissima (Hue) Lettau, 1958
- Species Lepraria decolorans (Turner & Borrer ex Sm.) Almb., 1948 accepted as Schismatomma decolorans (Turner & Borrer ex Sm.) Clauzade & Vezda, 1965
- Species Lepraria diffusa (J.R. Laundon) Kukwa, 2002
- Species Lepraria eburnea J.R. Laundon, 1992
- Species Lepraria elobata Tønsberg, 1992
- Species Lepraria fallax Persoon
- Species Lepraria finkii (de Lesd.) R.C. Harris, 1981 accepted as Lepraria lobificans Nyl., 1873
- Species Lepraria finkii (de Lesd.) R.C. Harris, 1985 accepted as Lepraria lobificans Nyl., 1873
- Species Lepraria flava (Schreber) Acharius, 1798 accepted as Chrysothrix candelaris (L.) J.R. Laundon, 1981
- Species Lepraria floerkeana Acharius
- Species Lepraria framinea Persoon
- Species Lepraria frigida J.R. Laundon, 1992 accepted as Lepraria eburnea J.R. Laundon, 1992
- Species Lepraria fuliginosa Acharius
- Species Lepraria glaucella (Flörke) Acharius
- Species Lepraria incana (Linnaeus) Acharius, 1803
- Species Lepraria infusionum Schrank, 1811 accepted as Chlorococcum infusionum (Schrank) Meneghini, 1843
- Species Lepraria jackii Tønsberg, 1992
- Species Lepraria jolithus (Linné) Acharius
- Species Lepraria kermesina Wrangel
- Species Lepraria lactea (L.) Hue accepted as Pertusaria lactea (L.) Arnold, 1872
- Species Lepraria lacustris (Girod-Chantrans) Droop
- Species Lepraria latebrarum Acharius
- Species Lepraria latebrarum (Acharius) Acharius
- Species Lepraria leiphaema Acharius, 1803 accepted as Haematomma ochroleucum (Neck.) J.R. Laundon, 1970
- Species Lepraria lesdainii (Hue) R.C. Harris, 1987 accepted as Botryolepraria lesdainii (Hue) Canals, Hern.-Mar., Gómez-Bolea & Llimona, 1997
- Species Lepraria lobificans Nyl., 1873
- Species Lepraria lutescens (Hoffmann) Acharius
- Species Lepraria membranacea (Dicks.) A.L. Sm.
- Species Lepraria murorum de Lesd., 1949 accepted as Lepraria nivalis J.R. Laundon, 1992
- Species Lepraria neglecta Vain., 1934 accepted as Rhymbocarpus neglectus (Vain.) Diederich & Etayo, 1998
- Species Lepraria neglecta (Nyl.) Erichsen, 1957
- Species Lepraria nigra Turner & Borrer ex Sm., 1812 accepted as Monodictys cellulosa S. Hughes, 1958
- Species Lepraria nigrescens Persoon
- Species Lepraria nivalis J.R. Laundon, 1992
- Species Lepraria nivalis Eichwald
- Species Lepraria nylanderiana Kümmerl. & Leuckert, 1995
- Species Lepraria olivacea Persoon ex Acharius accepted as Desmococcus olivaceus (Persoon ex Acharius) J.R. Laundon, 1985
- Species Lepraria rigidula (de Lesd.) Tønsberg, 1992
- Species Lepraria rosea (Schreber) Acharius
- Species Lepraria segestria (Necker) Acharius
- Species Lepraria sulphurea Ehrhart
- Species Lepraria sulphurella Räsänen, 1949
- Species Lepraria umbricola Tønsberg, 1992
- Species Lepraria virescens Sm. accepted as Caloplaca virescens (Sm.) Coppins, 1980
- Species Lepraria vouauxii (Hue) R.C. Harris, 1987
- Species Lepraria xanthina Vain., 1901 accepted as Chrysothrix xanthina (Vain.) Kalb, 2001
- Species Lepraria xantholyta (Nyl.) Lettau, 1918 accepted as Leproplaca xantholyta (Nyl.) Hue, 1883
- Species Lepraria zonata Brodo, 1968 accepted as Lepraria caesioalba (de Lesd.) J.R. Laundon, 1992
- Genus Leproloma Nylander ex Crombie, 1883
- Genus Muhria P.M. Jørgensen in P.M. Jørgensen & H.M. Jahns, 1987
- Genus Phyllocaulon (Tuckerman) Vainio, 1909 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Pulina Adanson, 1763 accepted as Lepraria Acharius, 1803
- Genus Squamarina Poelt, 1958
- Genus Squammaria A.P. de Candolle in Lamarck & A.P. de Candolle, 1805 accepted as Squamarina Poelt, 1958
- Genus Stereocaulomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Stereocaulon G.F. Hoffmann, 1796
- Genus Stereocladium Nylander, 1875 accepted as Stereocaulon G.F. Hoffmann, 1796
- Genus Xyleborus R.C. Harris & Ladd, 2007
- Family Tephromelataceae
- Family Vezdaeaceae
- Order Lecanoromycetes incertae sedis
- Order Lecanoromycetidae incertae sedis
- Order Lecideales
- Order Ostropales
- Order Ostropomycetidae incertae sedis
- Order Peltigerales
- Order Pertusariales
- Order Rhizocarpales
- Order Sarrameanales
- Order Teloschistales
- Order Umbilicariales
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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