Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Order Acarosporales
- Order Agyriales
- Order Baeomycetales
- Order Candelariales
- Order Lecanorales
- Family Alectoriaceae accepted as Parmeliaceae Zenker, 1827
- Family Anziaceae accepted as Parmeliaceae Zenker, 1827
- Family Aphanopsidaceae
- Family Arctomiaceae
- Family Bacidiaceae accepted as Ramalinaceae C.A. Agardh, 1821
- Family Biatorellaceae
- Family Brigantiaceae accepted as Brigantiaeaceae
- Family Brigantiaeaceae
- Family Byssolomataceae Zahlbruckner, 1926
- Family Calycidiaceae
- Family Carbonicolaceae M. Bendiksby & E. Timdal, 2013
- Family Cladoniaceae
- Family Crocyniaceae
- Family Dactylosporaceae
- Family Ectolechiaceae
- Family Gypsoplacaceae
- Family Haematommataceae
- Family Helocarpaceae
- Family Heterodeaceae accepted as Cladoniaceae
- Family Hymeneliaceae G.W. Körber, 1855
- Family Lecanoraceae G.W. Körber, 1855
- Family Lecanorales incertae sedis
- Family Malmideaceae K. Kalb, E. Rivas Plata & H.T. Lumbsch in Kalb, Rivas Plata, Lücking & Lumbsch, 2011
- Family Megalariaceae
- Family Miltideaceae
- Family Mycoblastaceae
- Family Parmeliaceae Zenker, 1827
- Family Pilocarpaceae Zahlbruckner, 1905
- Family Ramalinaceae C.A. Agardh, 1821
- Genus Aciculopsora A. Aptroot & M.T. Trest, 2006
- Genus Adelolecia Hertel & Hafellner, 1984
- Genus Alectoriopsis A.A. Elenkin, 1929 accepted as Ramalina Acharius, 1810
- Genus Arthrospora Th. Fries, 1861 accepted as Arthrosporum A. Massalongo, 1853
- Genus Arthrosporum A. Massalongo, 1853
- Genus Bacidia G. De Notaris, 1846
- Genus Bacidina A. Vezda, 1991
- Genus Bacidiomyces Ciferri & Tomaselli, 1953 accepted as Bacidia G. De Notaris, 1846
- Genus Bacidiopsora K. Kalb, 1988
- Genus Biatora E.M. Fries, 1817
- Genus Biatorina A. Massalongo, 1852 accepted as Catinaria Vainio, 1922
- Genus Byssopsora A. Massalongo, 1861 accepted as Bacidia G. De Notaris, 1846
- Genus Callopis (J. Müller Arg.) V. Köfaragó-Gyelnik, 1933 accepted as Phyllopsora J. Müller Arg., 1894
- Genus Catillariomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Cliostomum E.M. Fries, 1825
- Genus Catinaria Vainio, 1922
- Species Catinaria atropurpurea (Schaer.) Vezda & Poelt, 1981
- Species Catinaria grossa (Pers. ex Nyl.) Vain., 1922 accepted as Megalaria grossa (Pers. ex Nyl.) Hafellner, 1984
- Species Catinaria intermixta sensu auct., non (Nyl.) P. James accepted as Megalaria laureri (Hepp ex Th. Fr.) Hafellner, 1993
- Species Catinaria laureri (Hepp ex Th. Fr.) Degel., 1941 accepted as Megalaria laureri (Hepp ex Th. Fr.) Hafellner, 1993
- Species Catinaria leucoplaca sensu auct. accepted as Megalaria grossa (Pers. ex Nyl.) Hafellner, 1984
- Species Catinaria montana (Nyl.) Vain., 1922 accepted as Catinaria atropurpurea (Schaer.) Vezda & Poelt, 1981
- Species Catinaria neuschildii (Körb.) P. James, 1965
- Species Catinaria pulverea (Borrer) Vezda & Poelt, 1981 accepted as Megalaria pulverea (Borrer) Hafellner & E. Schreiner, 1992
- Species Catinaria subsphaeroides (Nyl.) P. James accepted as Megalaria laureri (Hepp ex Th. Fr.) Hafellner, 1993
- Species Catinaria versicolor (Fée) Sipman, 1983 accepted as Lopezaria versicolor (Fée) Kalb & Hafellner, 1990
- Genus Cenozosia A. Massalongo, 1854 accepted as Ramalina Acharius, 1810
- Genus Chlorodictyon J.G. Agardh, 1870 accepted as Ramalina Acharius, 1810
- Genus Cliostomum E.M. Fries, 1825
- Genus Compsocladium I.M. Lamb, 1956
- Genus Crustospathula A. Aptroot, 1998
- Genus Desmazieria Montagne, 1852 accepted as Ramalina Acharius, 1810
- Genus Dievernia M. Choisy, 1931 accepted as Ramalina Acharius, 1810
- Genus Echidnocymbium F.A. Brusse, 1987
- Genus Fistulariella P.A. Bowler & P.W. Rundel, 1977 accepted as Ramalina Acharius, 1810
- Genus Frutidella Kalb, 1994
- Genus Herteliana P.W. James in D.L. Hawksworth et al., 1980
- Genus Hollosia Köfaragó-Gyelnik, 1939 accepted as Scutula Tulasne, 1852
- Genus Japewia T. Tønsberg, 1990
- Genus Japewiella C. Printzen, 1999
- Genus Jarmania G. Kantvilas, 1996
- Genus Krogia Timdal, 2002
- Genus Lecideomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Adelolecia Hertel & Hafellner, 1984
- Genus Lopezaria Kalb & Hafellner, 1990
- Genus Lueckingia A. Aptroot & L. Umaña, 2006
- Genus Megalopsora Vainio, 1921 accepted as Physcidia Tuckerman, 1862
- Genus Niebla P.W. Rundel & P.A. Bowler, 1978 accepted as Ramalina Acharius, 1810
- Genus Phyllopsora J. Müller Arg., 1894
- Genus Physcidia Tuckerman, 1862
- Genus Platisma P. Browne ex Adanson, 1763 accepted as Ramalina Acharius, 1810
- Genus Platysma Hill, 1773 accepted as Ramalina Acharius, 1810
- Genus Pseudolepraria M. Kukwa, A. Jabłońska, M. Kosecka & B. Guzow-Krzemińska in Kukwa et al., 2023
- Genus Psorella J. Müller Arg., 1894 accepted as Bacidia G. De Notaris, 1846
- Genus Psoromopsis Nylander, 1863 accepted as Phyllopsora J. Müller Arg., 1894
- Genus Ramalina Acharius, 1810
- Genus Ramalinomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Ramalina Acharius, 1810
- Genus Ramalinopsis (A. Zahlbruckner) G. Follmann & S. Huneck, 1969
- Genus Rhytismella P.A. Karsten, 1884 accepted as Cliostomum E.M. Fries, 1825
- Genus Rolfidium R. Moberg, 1986
- Genus Schadonia Körber, 1859
- Genus Scutula Tulasne, 1852
- Genus Solenospora
- Genus Speerschneidera Trevisan, 1861
- Genus Sporacestra A. Massalongo, 1860 accepted as Bacidia G. De Notaris, 1846
- Genus Sporoblastia Trevisan, 1851 accepted as Cliostomum E.M. Fries, 1825
- Genus Squamacidia L. Brako, 1989
- Genus Stirtoniella D.J. Galloway, Hafellner & Elix, 2005
- Genus Tibellia A. Vezda & J. Hafellner in J. Hafellner & A. Vezda, 1992
- Genus Toniniopsis Frey, 1926
- Genus Trichoramalina P.W. Rundel & P.A. Bowler, 1974 accepted as Ramalina Acharius, 1810
- Genus Tylothallia P. James & R. Kilias in R. Kilias, 1981
- Genus Urophora Sommerfelt ex Arnold, 1899 accepted as Bacidia G. De Notaris, 1846
- Genus Vermilacinia R.W. Spjut & M.E. Hale in F.J.A. Daniels et al., 1995 accepted as Ramalina Acharius, 1810
- Genus Waynea R. Moberg, 1990
- Family Sphaerophoraceae
- Family Stereocaulaceae
- Family Tephromelataceae
- Family Vezdaeaceae
- Order Lecanoromycetes incertae sedis
- Order Lecanoromycetidae incertae sedis
- Order Lecideales
- Order Ostropales
- Order Ostropomycetidae incertae sedis
- Order Peltigerales
- Order Pertusariales
- Order Rhizocarpales
- Order Sarrameanales
- Order Teloschistales
- Order Umbilicariales
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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