Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Phylum Acanthocephala
- Phylum Agmata †
- Phylum Animalia (awaiting allocation)
- Phylum Animalia incertae sedis
- Phylum Annelida
- Phylum Arthropoda
- Phylum Brachiopoda
- Phylum Bryozoa
- Phylum Cephalorhyncha incertae sedis
- Phylum Chaetognatha
- Phylum Chitinozoa †
- Phylum Chordata
- Phylum Cnidaria
- Phylum Ctenophora
- Phylum Cycliophora
- Phylum Cycloneuralia incertae sedis
- Phylum Ecdysozoa incertae sedis †
- Phylum Echinodermata
- Phylum Entoprocta
- Phylum Gastrotricha
- Phylum Gnathostomulida
- Phylum Hemichordata
- Phylum Hyolitha †
- Phylum Kinorhyncha
- Phylum Lobopoda †
- Phylum Loricifera
- Phylum Micrognathozoa
- Phylum Mollusca
- Phylum Monoblastozoa accepted as Animalia incertae sedis
- Phylum Nematoda
- Phylum Nematomorpha
- Phylum Nemertea
- Phylum Onychophora
- Phylum Orthonectida
- Phylum Phoronida
- Phylum Placozoa
- Phylum Platyhelminthes
- Phylum Pogonophora accepted as Siboglinidae Caullery, 1914
- Phylum Porifera
- Class Archaeocyatha †
- Class Archaeocyathea † accepted as Archaeocyatha †
- Class Calcarea
- Class Calcispongea
- Class Demospongea
- Order Agelasida
- Order Astrophorida
- Order Axinellida
- Order Bubarida
- Order Ceractinomorpha (awaiting allocation)
- Order Ceratoporellida
- Order Chaetetida accepted as Demospongea
- Order Chondrillida
- Order Chondrosida accepted as Chondrosiida
- Order Chondrosiida
- Order Choristida
- Order Demospongea (awaiting allocation) †
- Order Demospongea incertae sedis
- Order Demospongiae (awaiting allocation)
- Order Demospongiae incertae sedis
- Order Dendroceratida
- Order Desmophorida
- Order Dictyoceratida
- Order Epipolasida †
- Order Guadalupiida
- Order Hadromerida
- Order Halichondrida accepted as Demospongea
- Order Haplosclerida
- Order Homosclerophorida
- Order Keratosa accepted as Dendroceratida
- Order Lithistida
- Order Megalithistida †
- Order Merliida
- Order Monalithistida †
- Order Monaxonida
- Order Myxillina (awaiting allocation)
- Order Operculospongia †
- Order Petrosiida
- Order Poecilosclerida
- Family Acarnidae Dendy, 1922
- Family Amphilectidae
- Family Anchinoidae Topsent, 1928 accepted as Hymedesmiidae Topsent, 1928
- Family Biemnidae Hentschel, 1923
- Family Chondropsidae Carter, 1886
- Family Chondropsiidae accepted as Chondropsidae Carter, 1886
- Family Cladorhizidae Dendy, 1922
- Family Clathriidae Lendenfeld, 1884 accepted as Microcionidae Carter, 1875
- Family Coelocarteriidae Leal et al., 2023
- Family Coelosphaeridae Dendy, 1922
- Family Cornulidae Lévi & Lévi, 1983 accepted as Acarnidae Dendy, 1922
- Family Crambeidae Lévi, 1963
- Family Crellidae Dendy, 1922
- Family Dendoricellidae Hentschel, 1923
- Family Desmacellidae Ridley & Dendy, 1886
- Family Desmacididae Schmidt, 1870
- Family Esperiadae Gray, 1867 accepted as Mycalidae Lundbeck, 1905
- Family Esperiopsidae Hentschel, 1923
- Family Guitarridae Dendy, 1924
- Family Hymedesmiidae Topsent, 1928
- Family Iophonidae Burton, 1929 accepted as Acarnidae Dendy, 1922
- Family Iotrochotidae Dendy, 1922
- Family Isodictyidae Dendy, 1924
- Family Microcionidae Carter, 1875
- Genus Aaata de Laubenfels, 1930 accepted as Clathria Schmidt, 1862
- Genus Acarnia Gray, 1867 accepted as Antho Gray, 1867
- Genus Allocia Hallmann, 1920 accepted as Clathria Schmidt, 1862
- Genus Anaata de Laubenfels, 1932 accepted as Clathria Schmidt, 1862
- Genus Anomoclathria Topsent, 1929 accepted as Antho Gray, 1867
- Genus Antherochalina Lendenfeld, 1887 accepted as Clathria Schmidt, 1862
- Genus Antho Gray, 1867
- Genus Anthoarcuata Bakus, 1966 accepted as Antho Gray, 1867
- Genus Artemisina Vosmaer, 1885
- Genus Artenisina Burton, 1934 accepted as Artemisina Vosmaer, 1885
- Genus Aulenella Burton & Rao, 1932 accepted as Clathria Schmidt, 1862
- Genus Axocielita de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Axociella Hallmann, 1920 accepted as Clathria Schmidt, 1862
- Genus Axosuberites Topsent, 1893 accepted as Clathria Schmidt, 1862
- Genus Axuberites Topsent, 1898
- Genus Bienna
- Genus Clatharia Kumar, 1925 accepted as Clathria Schmidt, 1862
- Genus Clathria Schmidt, 1862
- Genus Clathriella Burton, 1935 accepted as Antho Gray, 1867
- Genus Clathriopsamma Lendenfeld, 1888 accepted as Clathria Schmidt, 1862
- Genus Colloclathria Dendy, 1922 accepted as Clathria Schmidt, 1862
- Genus Cornulotrocha Topsent, 1927 accepted as Clathria Schmidt, 1862
- Genus Damoseni de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Dendrocia Hallmann, 1920 accepted as Clathria Schmidt, 1862
- Genus Dictyociona Topsent, 1913 accepted as Clathria Schmidt, 1862
- Genus Dictyoclathria Topsent, 1920 accepted as Antho Gray, 1867
- Genus Dirrhopalum Ridley in Ridley & Duncan, 1881 accepted as Antho Gray, 1867
- Genus Dyctioclathria Ferrer-Hernandez, 1921 accepted as Antho Gray, 1867
- Genus Echinochalina Thiele, 1903
- Genus Echinoclathria Carter, 1885
- Genus Echinonema Carter, 1881
- Genus Echinonema Carter, 1875 accepted as Clathria Schmidt, 1862
- Genus Echinoplocamia Burton, 1959 accepted as Antho Gray, 1867
- Genus Ecinoclathria Topsent, 1894 accepted as Echinoclathria Carter, 1885
- Genus Fisherispongia de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Halapsamina Lendenfeld, 1886 accepted as Holopsamma Carter, 1885
- Genus Halene Lendenfeld, 1887 accepted as Halme Lendenfeld, 1886
- Genus Halme Lendenfeld, 1886 accepted as Holopsamma Carter, 1885
- Species Halme gigantea Lendenfeld, 1886 accepted as Holopsamma laminaefavosa Carter, 1885
- Species Halme globosa Lendenfeld, 1886 accepted as Holopsamma crassa Carter, 1885
- Species Halme hancocki Dickinson, 1945 accepted as Hyattella hancocki (Dickinson, 1945)
- Species Halme irregularis Lendenfeld, 1889 accepted as Holopsamma laminaefavosa Carter, 1885
- Species Halme laxa Lendenfeld, 1886 accepted as Holopsamma laminaefavosa Carter, 1885
- Species Halme micropora Lendenfeld, 1885 accepted as Holopsamma crassa Carter, 1885
- Species Halme nidus Lendenfeld, 1886
- Species Halme nidusvesparum Lendenfeld, 1885
- Species Halme robusta Keller, 1889 accepted as Echinoclathria robusta (Keller, 1889)
- Species Halme simplex Lendenfeld, 1889 accepted as Holopsamma simplex (Lendenfeld, 1886)
- Species Halme tingens Lendenfeld, 1886 accepted as Dysidea implexa (Ridley, 1884)
- Species Halme villosa (Lendenfeld, 1886) accepted as Dysidea villosa (Lendenfeld, 1886)
- Genus Halopsamma Shaw, 1927 accepted as Holopsamma Carter, 1885
- Genus Heteroclathria Topsent, 1904 accepted as Antho Gray, 1867
- Genus Holoplocamia de Laubenfels, 1936 accepted as Antho Gray, 1867
- Genus Holoposamma Dendy, 1896 accepted as Holopsamma Carter, 1885
- Genus Holopsamma Carter, 1885
- Genus Hymantho Burton, 1930 accepted as Clathria Schmidt, 1862
- Genus Isociella Hallmann, 1920 accepted as Clathria Schmidt, 1862
- Genus Isociona Hallmann, 1920 accepted as Antho Gray, 1867
- Genus Isopenectya Hallmann, 1920 accepted as Antho Gray, 1867
- Genus Jia de Laubenfels, 1930 accepted as Antho Gray, 1867
- Genus Labacea de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Leptoclathria Topsent, 1928 accepted as Clathria Schmidt, 1862
- Genus Ligrota de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Lissoplocamia Brøndsted, 1924 accepted as Antho Gray, 1867
- Genus Litaspongia de Laubenfels, 1954 accepted as Clathria Schmidt, 1862
- Genus Marleyia Burton, 1931 accepted as Clathria Schmidt, 1862
- Genus Microciana Topsent, 1889 accepted as Clathria Schmidt, 1862
- Genus Microciona Bowerbank, 1862 accepted as Clathria Schmidt, 1862
- Genus Microciona Bowerbank in MacAndrew, 1861 accepted as Clathria Schmidt, 1862
- Genus Microcionia Koehler, 1885 accepted as Clathria Schmidt, 1862
- Genus Microclona accepted as Clathria Schmidt, 1862
- Genus Microviona Schmidt, 1868 accepted as Clathria Schmidt, 1862
- Genus Ophistospongia Gray, 1867 accepted as Clathria Schmidt, 1862
- Genus Ophlitapsongia Hanitsch, 1890 accepted as Ophlitaspongia Bowerbank, 1866
- Genus Ophlitaspongia Bowerbank, 1866
- Genus Ophlitospongia accepted as Ophlitaspongia Bowerbank, 1866
- Genus Oplitaspongia accepted as Clathria Schmidt, 1862
- Genus Palisca Gray, 1867
- Genus Pandaros Duchassaing & Michelotti, 1864
- Genus Pandoros Duchassaing & Michelotti, 1864
- Genus Paradoryx Hallmann, 1920 accepted as Clathria Schmidt, 1862
- Genus Paratenaciella Vacelet & Vasseur, 1971 accepted as Clathria Schmidt, 1862
- Genus Paresperia Burton, 1930 accepted as Clathria Schmidt, 1862
- Genus Pitalia Gray, 1867 accepted as Clathria Schmidt, 1862
- Genus Placomia sensu Arnesen, 1903 accepted as Antho Gray, 1867
- Genus Plectispa Lendenfeld, 1888 accepted as Holopsamma Carter, 1885
- Genus Plocamia Schmidt, 1870 accepted as Antho Gray, 1867
- Genus Plocamilla Topsent, 1928 accepted as Antho Gray, 1867
- Genus Plocamiopsis Topsent, 1904 accepted as Antho Gray, 1867
- Genus Protoclathria Burton, 1932 accepted as Antho Gray, 1867
- Genus Protophlitaspongia Burton, 1934 accepted as Echinochalina Thiele, 1903
- Genus Psammotoxa de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Pseudanchinoe Burton, 1929 accepted as Clathria Schmidt, 1862
- Genus Pseudanchinoë Burton, 1929 accepted as Pseudanchinoe Burton, 1929
- Genus Pseudoanchinoe
- Genus Qasimella Thomas, 1974 accepted as Artemisina Vosmaer, 1885
- Genus Quintoxilla de Laubenfels, 1950 accepted as Antho Gray, 1867
- Genus Quizciona de Laubenfels, 1936 accepted as Antho Gray, 1867
- Genus Ramoses de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Raphidophlus accepted as Clathria Schmidt, 1862
- Genus Rhaphidophlus Ehlers, 1870 accepted as Clathria Schmidt, 1862
- Genus Rhaphidoplus Noll, 1888 accepted as Rhaphidophlus Ehlers, 1870
- Genus Rhapidophlus Ehlers, 1870 accepted as Clathria Schmidt, 1862
- Genus Sigmeurypon Topsent, 1928
- Genus Sophax Gray, 1867 accepted as Clathria Schmidt, 1862
- Genus Stylotellopsis Thiele, 1905 accepted as Clathria Schmidt, 1862
- Genus Tablis de Laubenfels, 1936 accepted as Echinochalina Thiele, 1903
- Genus Tenacia Schmidt, 1870 accepted as Clathria Schmidt, 1862
- Genus Tenaciella Hallmann, 1920 accepted as Clathria Schmidt, 1862
- Genus Thalassodendron Lendenfeld, 1888 accepted as Clathria Schmidt, 1862
- Genus Thalisias Duchassaing & Michelotti, 1864
- Genus Thalyseurypon de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Thalysias Duchassaing & Michelotti, 1864 accepted as Clathria Schmidt, 1862
- Genus Wetmoreus de Laubenfels, 1936 accepted as Clathria Schmidt, 1862
- Genus Wilsonella Carter, 1885 accepted as Clathria Schmidt, 1862
- Family Mycalidae Lundbeck, 1905
- Family Myxillidae Dendy, 1922
- Family Phellodermidae Van Soest & Hajdu, 2002
- Family Phoriospongiidae Lendenfeld, 1888
- Family Plocamiidae
- Family Podospongiidae de Laubenfels, 1936
- Family Poecilosclerida (awaiting allocation)
- Family Psammascidae
- Family Tedaniidae Ridley & Dendy, 1886
- Order Protomonaxonida †
- Order Sclerospongiae (awaiting allocation)
- Order Scopalinida
- Order Spirophorida
- Order Spirosclerophorida
- Order Spongillida
- Order Spongillina (awaiting allocation)
- Order Suberitida
- Order Tabulospongida
- Order Tetractinellida
- Order Tetractinomorpha (awaiting allocation)
- Order Tetralithistida †
- Order Vaceletida †
- Order Verongida accepted as Verongiida
- Order Verongiida
- Order Verticillitida
- Family Burgundiidae Dehorne, 1920 †
- Family Neuroporidae Termier, Termier & Ramalho, 1985 †
- Family Spongiostromidae Gürich, 1906 †
- Genus Atrochaetetes Cuif & Fischer, 1974 †
- Genus Bauneia Peterhans, 1927 †
- Genus Blastochaetetes Dietrich, 1919 †
- Genus Carnegia Girty, 1907 † accepted as Carnegiea Girty in Willis, 1913 †
- Genus Carnegiea Girty in Willis, 1913 †
- Genus Cassianopora Bizzarini & Braga, 1978 †
- Genus Chaetetella Sokolov, 1939 †
- Genus Chaetetipora Struve, 1897 †
- Genus Chaetetiporella Sokolov, 1939 † accepted as Chaetetella Sokolov, 1939 †
- Genus Chaetosclera Reitner & Engeser, 1989 †
- Genus Conosclera Wu, 1991 †
- Genus Fistulimurina Sokolov, 1947 †
- Genus Flabellisclera Wu, 1991 †
- Genus Fungispongia Wu, 1991 †
- Genus Gigantosclera Wu, 1991 †
- Genus Gracilitubulus Wu, 1991 †
- Genus Ischnspongia Wu, Zhu & Steiner, 2014 †
- Genus Leiochaetetes Andri & Rossi, 1981 †
- Genus Litophyllum Etheridge, 1899 †
- Genus Meandripetra Dieci, Russo, Russo & Marchi, 1977 †
- Genus Mirispongia Wu, 1991 †
- Genus Moskovia Sokolov, 1950 †
- Genus Neosolenopora Mastrorilli, 1955 †
- Genus Pamirochaetetes Boiko, 1979 †
- Genus Parabauneia Wu, 1991 †
- Genus Planochaetetes Solov'eva, 1980 †
- Genus Precaratoporella † accepted as Preceratoporella Termier & Termier in Termier, Termier & Vachard, 1977 †
- Genus Preceratoporella Termier & Termier in Termier, Termier & Vachard, 1977 †
- Genus Pseudomonotrypa Reschetkin, 1927 † accepted as Bauneia Peterhans, 1927 †
- Genus Ptilispongia Wu, Zhu & Steiner, 2014 †
- Genus Ptychochaetetes Koechlin, 1947 †
- Genus Septochaetetes Rios & Almela, 1944 †
- Genus Siphostroma Steiner, 1932 †
- Genus Solenopora Dybowski, 1878 †
- Genus Spinochaetetes Kim in Yang, Kim & Chow, 1978 †
- Genus Spongiothecopora Sokolov, 1939 †
- Genus Stromatoaxinella Wood & Reitner, 1988 †
- Genus Tubulispongia Wu, 1991 †
- Genus Varioparietes Bodergat, 1975 † accepted as Ptychochaetetes Koechlin, 1947 †
- Genus Zlambachella Flügel, 1961 †
- Class Heteractinida †
- Class Hexactinellida
- Class Hyalospongea accepted as Hexactinellida
- Class Hyalospongiae accepted as Hexactinellida
- Class Porifera (awaiting allocation)
- Class Spongiomorpha
- Class Stromatoporata accepted as Stromatoporoidea †
- Class Stromatoporoidea †
- Genus Achilleum Oken, 1815
- Genus Calliospongia Chen, Porras, Ma, Hou & Wörheide, 2023 †
- Genus Celtispongia Peel, 2019 †
- Genus Conciliospongia Botting, Zhang & Muir, 2017 †
- Genus Heteractenigma Botting & Zhang, 2013 †
- Genus Iniquispongia Senowbari-Daryan, Fürsich & Rashidi, 2020 †
- Genus Palaeomillepora Gabilly & Lafuste, 1957, nom. nud. † accepted as Palaeomillepora Gabilly & Lafuste, 1957 †
- Genus Palaeomillepora Gabilly & Lafuste, 1957 †
- Genus Perturbatacrusta Schlagintweit & Gawlick, 2011 †
- Genus Portalia Walcott, 1918 †
- Genus Sanningasoqia Peel, 2019 †
- Genus Seqineqia Peel, 2018 †
- Genus Seriespongia Senowbari-Daryan, Fürsich & Rashidi, 2020 †
- Genus Siphydora James-Clark, 1865
- Genus Sisamatispongia Peel, 2018 †
- Genus Sulukispicula Peel, 2019 †
- Genus Tallitaniqa Peel, 2018 †
- Genus Vasispongia Tang & Xiao in Tang et al., 2019 †
- Phylum Priapula accepted as Priapulida
- Phylum Priapulida
- Phylum Problematica † accepted as Animalia incertae sedis
- Phylum Rhombozoa
- Phylum Rotifera
- Phylum Scalidophora incertae sedis
- Phylum Sipuncula
- Phylum Tardigrada
- Phylum Trace fossils †
- Phylum Vendobionta †
- Phylum Vestimentifera accepted as Siboglinidae Caullery, 1914
- Phylum Vetulicolia †
- Phylum Vinctiplicata incertae sedis †
- Phylum Xenacoelomorpha
- Genus Trilobocaris Pribyl, 1953 †
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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