Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Order Acarosporales
- Order Agyriales
- Order Baeomycetales
- Order Candelariales
- Order Lecanorales
- Order Lecanoromycetes incertae sedis
- Order Lecanoromycetidae incertae sedis
- Order Lecideales
- Order Ostropales
- Order Ostropomycetidae incertae sedis
- Order Peltigerales
- Order Pertusariales
- Family Coccotremataceae
- Family Icmadophilaceae
- Family Megasporaceae
- Genus Agrestia J.W. Thomson, 1961 accepted as Aspicilia A. Massalongo, 1852
- Genus Aspicilia A. Massalongo, 1852
- Genus Aspiciliella M. Choisy in R.G. Werner, 1932
- Genus Athecaria Nylander in Brotherus, 1897 accepted as Aspicilia A. Massalongo, 1852
- Genus Chlorangium H.F. Link, 1849 accepted as Aspicilia A. Massalongo, 1852
- Genus Circinaria Link, 1809 accepted as Aspicilia A. Massalongo, 1852
- Species Circinaria berteriana Fée, 1824 accepted as Pyxine berteriana (Fée) Imshaug, 1957
- Species Circinaria erythroxyli (Spreng.) Fée, 1824 accepted as Coccocarpia erythroxyli (Spreng.) Swinscow & Krog, 1976
- Species Circinaria subcircinata (Nyl.) M. Choisy, 1951 accepted as Aspicilia subcircinata (Nyl.) Coppins, 1980
- Genus Lobothallia (Clauzade & Cl. Roux) J. Hafellner, 1991
- Genus Manzonia Garovaglio, 1866 accepted as Aspicilia A. Massalongo, 1852
- Genus Megaspora (G. Clauzade & C. Roux) J. Hafellner & V. Wirth in Wirth, 1987
- Genus Paraplacodium Motyka, 1996 accepted as Aspicilia A. Massalongo, 1852
- Genus Protoplacodium Motyka, 1995 accepted as Lobothallia (Clauzade & Cl. Roux) J. Hafellner, 1991
- Genus Sagedia Acharius, 1809 accepted as Aspicilia A. Massalongo, 1852
- Genus Sphaerothallia T.F.L. Nees, 1831 accepted as Aspicilia A. Massalongo, 1852
- Genus Teuvoa M. Sohrabi & S.D. Leavitt in Sohrabi, Leavitt, Rico, Halici, Shrestha & Stenroos, 2013
- Genus Urceolaria Hooker, 1821 accepted as Aspicilia A. Massalongo, 1852
- Family Ochrolechiaceae
- Family Pertusariaceae G.W. Körber ex G.W. Körber, 1855
- Family Porpidiaceae accepted as Pertusariaceae G.W. Körber ex G.W. Körber, 1855
- Order Rhizocarpales
- Order Sarrameanales
- Order Teloschistales
- Order Umbilicariales
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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