Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Class Agaricomycetes
- Class Agaricostilbomycetes
- Class Atractiellomycetes
- Class Basidiomycota incertae sedis
- Class Classiculomycetes
- Class Cryptomycocolacomycetes
- Class Cystobasidiomycetes
- Class Dacrymycetes
- Class Entorrhizomycetes
- Class Exobasidiomycetes
- Class Geminibasidiomycetes
- Class Microbotryomycetes
- Class Mixiomycetes
- Class Pucciniomycetes
- Order Helicobasidiales
- Order Pachnocybales
- Order Platygloeales
- Order Pucciniales
- Family Chaconiaceae
- Family Coleosporiaceae
- Family Cronartiaceae
- Family Melampsoraceae
- Family Mikronegeriaceae
- Family Phakopsoraceae
- Family Phragmidiaceae
- Family Pileolariaceae
- Family Pucciniaceae
- Family Pucciniales incertae sedis
- Family Pucciniastraceae
- Family Pucciniosiraceae
- Family Raveneliaceae
- Genus Allotelium H. Sydow, 1939
- Genus Anthomyces Dietel, 1899
- Genus Anthomycetella H. Sydow & P. Sydow, 1916
- Genus Apra J.F. Hennen & F.O. Freire, 1979
- Genus Bibulocystis J. Walker, Beilharz, Pascoe & Priest, 2006
- Genus Cephalotelium H. Sydow, 1921 accepted as Ravenelia M.J. Berkeley, 1853
- Genus Cumminsina Petrak, 1955
- Genus Cumminsinia
- Genus Cystingophora J.C. Arthur, 1907 accepted as Ravenelia M.J. Berkeley, 1853
- Genus Cystomyces H. Sydow, 1926
- Genus Cystotelium H. Sydow, 1921 accepted as Ravenelia M.J. Berkeley, 1853
- Genus Dendroecia J.C. Arthur, 1906 accepted as Ravenelia M.J. Berkeley, 1853
- Genus Diabole Arthur, 1922
- Species Diabole cubensis (Arthur & J.R. Johnst.) Arthur, 1922
- Genus Diabolidium Berndt, 1995
- Genus Dicheirinia J.C. Arthur, 1907
- Genus Diorchidiella J.C. Lindquist, 1957
- Genus Diorchidium Kalchbrenner, 1882
- Genus Diphragmium Boedijn, 1960 accepted as Diorchidium Kalchbrenner, 1882
- Genus Endoraecium Hodges & D.E. Gardner, 1984
- Genus Esalque J.F. Hennen, M.B. Figueredo & A.A. Carvalho, 2000
- Genus Hapalophragmiopsis Thirumalachar, 1950 accepted as Hapalophragmium H. Sydow & P. Sydow, 1901
- Genus Hapalophragmium H. Sydow & P. Sydow, 1901
- Genus Haplophragmium accepted as Hapalophragmium H. Sydow & P. Sydow, 1901
- Genus Haploravenelia H. Sydow, 1921 accepted as Ravenelia M.J. Berkeley, 1853
- Genus Kernkampella Rajendren, 1970
- Genus Lipocystis Cummins, 1937
- Genus Longia H. Sydow, 1921 accepted as Ravenelia M.J. Berkeley, 1853
- Genus Neoravenelia W.H. Long, 1903 accepted as Ravenelia M.J. Berkeley, 1853
- Genus Nyssopsora J.C. Arthur, 1906
- Genus Nyssopsorella H. Sydow, 1921 accepted as Triphragmiopsis Naumov, 1914
- Genus Oplophora H. Sydow, 1921 accepted as Nyssopsora J.C. Arthur, 1906
- Genus Pleoravenelia W.H. Long, 1903 accepted as Ravenelia M.J. Berkeley, 1853
- Genus Racospermyces J. Walker, 2001
- Genus Ravenelia M.J. Berkeley, 1853
- Genus Reyesiella P.A. Saccardo, 1917 accepted as Anthomycetella H. Sydow & P. Sydow, 1916
- Genus Sphaenospora
- Genus Sphaerophragmium Magnus, 1891
- Genus Sphenospora Dietel, 1892
- Genus Spumula Mains, 1935
- Genus Triactella H. Sydow, 1921 accepted as Hapalophragmium H. Sydow & P. Sydow, 1901
- Genus Triphragmiopsis Naumov, 1914
- Genus Triphragmium Link in Willdenow, 1825
- Genus Ypsilospora Cummins, 1941
- Family Sphaerophragmiaceae accepted as Raveneliaceae
- Family Uncolaceae
- Family Uropyxidaceae
- Order Pucciniomycetes incertae sedis
- Order Septobasidiales
- Class Tremellomycetes
- Class Tritirachiomycetes
- Class Ustilaginomycetes
- Class Wallemiomycetes
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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