Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Order Acarosporales
- Order Agyriales
- Order Baeomycetales
- Order Candelariales
- Order Lecanorales
- Family Alectoriaceae accepted as Parmeliaceae Zenker, 1827
- Family Anziaceae accepted as Parmeliaceae Zenker, 1827
- Family Aphanopsidaceae
- Family Arctomiaceae
- Family Bacidiaceae accepted as Ramalinaceae C.A. Agardh, 1821
- Family Biatorellaceae
- Family Brigantiaceae accepted as Brigantiaeaceae
- Family Brigantiaeaceae
- Family Byssolomataceae Zahlbruckner, 1926
- Family Calycidiaceae
- Family Carbonicolaceae M. Bendiksby & E. Timdal, 2013
- Family Cladoniaceae
- Family Crocyniaceae
- Family Dactylosporaceae
- Family Ectolechiaceae
- Family Gypsoplacaceae
- Family Haematommataceae
- Family Helocarpaceae
- Family Heterodeaceae accepted as Cladoniaceae
- Family Hymeneliaceae G.W. Körber, 1855
- Family Lecanoraceae G.W. Körber, 1855
- Family Lecanorales incertae sedis
- Genus Adermatis Clements, 1909 accepted as Lecania A. Massalongo, 1853
- Genus Aipospila Trevisan, 1857 accepted as Lecania A. Massalongo, 1853
- Genus Allophoron J. Nádvorník, 1942
- Genus Aspilidea J. Hafellner in J. Hafellner & Türk, 2001
- Genus Auriculora K. Kalb, 1988
- Genus Bartlettiella D.J. Galloway & P.M. Jørgensen, 1990
- Genus Bayrhofferia Trevisan, 1857 accepted as Lecania A. Massalongo, 1853
- Genus Bilimbia G. De Notaris, 1846 accepted as Mycobilimbia H. Rehm, 1890
- Genus Botryolepraria A. Canals, M. Hernández-Mariné, A. Gómez-Bolea & X. Llimona, 1997
- Genus Brucea J. Rikkinen, 2003 accepted as Bruceomyces J. Rikkinen in Tuovila, Rikkinen & Huhtinen, 2007
- Genus Bruceomyces J. Rikkinen in Tuovila, Rikkinen & Huhtinen, 2007
- Genus Buelliastrum A. Zahlbruckner in Handel-Mazzetti, 1930
- Genus Chlorangium Rabenhorst, 1857
- Genus Corticifraga D.L. Hawksworth & R. Santesson in H.M. Jahns, 1990
- Genus Corticiruptor M. Wedin & J. Hafellner, 1998
- Genus Dimerospora Th. Fries, 1860 accepted as Lecania A. Massalongo, 1853
- Genus Diphratora Trevisan ex A. Jatta, 1900 accepted as Solenopsora A. Massalongo, 1855
- Genus Ditylis Clements, 1909 accepted as Tylophoron Nylander ex Stizenberger, 1862
- Genus Dyslecanis Clements, 1909 accepted as Lecania A. Massalongo, 1853
- Genus Farnoldia H. Hertel, 1983
- Genus Haploloma Trevisan, 1857
- Genus Heterocyphelium Vainio, 1927
- Genus Lecania A. Massalongo, 1853
- Genus Lecaniella A. Jatta, 1889 accepted as Lecania A. Massalongo, 1853
- Genus Lecaniomyces E.A. Thomas, 1939 accepted as Lecania A. Massalongo, 1853
- Genus Lecidoma G. Schneider & H. Hertel in H. Hertel, 1981
- Genus Lepidoma (Acharius) S.F. Gray, 1821 accepted as Lecidoma G. Schneider & H. Hertel in H. Hertel, 1981
- Genus Leprocaulon Nylander in Lamy, 1878
- Genus Lilliputeana Sérusiaux, 1989 accepted as Scoliciosporum A. Massalongo, 1852
- Genus Melanolecia H. Hertel in J. Poelt & A. Vezda, 1981
- Species Melanolecia jurana (Schaer.) Hertel, 1981 accepted as Farnoldia jurana (Schaer.) Hertel, 1983
- Genus Mycobilimbia H. Rehm, 1890
- Genus Myochroidea C. Printzen, T. Spribille & T. Tønsberg, 2008
- Genus Myxobilimbia J. Hafellner in J. Hafellner & Türk, 2001
- Genus Nimisiostella V. Calatayud, E. Barreno & O.E. Eriksson, 1997
- Genus Notolecidea H. Hertel, 1984
- Genus Placodiella (A. Zahlbruckner) Szatala, 1941 accepted as Solenopsora A. Massalongo, 1855
- Genus Placolecania (J. Steiner) A. Zahlbruckner, 1906 accepted as Solenopsora A. Massalongo, 1855
- Genus Polyozosia A. Massalongo, 1855 accepted as Lecania A. Massalongo, 1853
- Genus Probilimbia Vainio, 1899 accepted as Mycobilimbia H. Rehm, 1890
- Genus Psilolechia A. Massalongo, 1860
- Genus Psorotichiella R.G. Werner, 1955
- Genus Ravenelula Spegazzini, 1881
- Genus Ricasolia A. Massalongo, 1855 accepted as Solenopsora A. Massalongo, 1855
- Genus Scalidium Hellbom, 1867 accepted as Scoliciosporum A. Massalongo, 1852
- Genus Scoliciosporomyces Ciferri & Tomaselli, 1953 accepted as Scoliciosporum A. Massalongo, 1852
- Genus Scoliciosporum A. Massalongo, 1852
- Genus Scutellaria Baumgarten, 1790
- Genus Solenopsora A. Massalongo, 1855
- Genus Sphaerocarpus Ehrhart, 1793
- Genus Spilonema A. Henssen & T. Tønsberg, 2000
- Genus Strangospora Körber, 1860
- Genus Thamnolecania (Vainio) Gyelnik, 1933
- Genus Thylophoron Nylander, 1862 accepted as Tylophoron Nylander ex Stizenberger, 1862
- Genus Tremolecia M. Choisy, 1953
- Genus Tylophoron Nylander ex Stizenberger, 1862
- Genus Umbilithecium J. Etayo, 2008
- Genus Umushamyces J. Etayo, 2008
- Genus Weitenwebera Opiz, 1857 accepted as Mycobilimbia H. Rehm, 1890
- Family Malmideaceae K. Kalb, E. Rivas Plata & H.T. Lumbsch in Kalb, Rivas Plata, Lücking & Lumbsch, 2011
- Family Megalariaceae
- Family Miltideaceae
- Family Mycoblastaceae
- Family Parmeliaceae Zenker, 1827
- Family Pilocarpaceae Zahlbruckner, 1905
- Family Ramalinaceae C.A. Agardh, 1821
- Family Sphaerophoraceae
- Family Stereocaulaceae
- Family Tephromelataceae
- Family Vezdaeaceae
- Order Lecanoromycetes incertae sedis
- Order Lecanoromycetidae incertae sedis
- Order Lecideales
- Order Ostropales
- Order Ostropomycetidae incertae sedis
- Order Peltigerales
- Order Pertusariales
- Order Rhizocarpales
- Order Sarrameanales
- Order Teloschistales
- Order Umbilicariales
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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