Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
3 The last expanded taxon is highlighted
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Class Caulochytriomycetes accepted as Chytridiomycetes
- Class Chytridiomycetes
- Class Chytridiomycota incertae sedis
- Class Cladochytriomycetes accepted as Chytridiomycetes
- Class Hyaloraphidiomycetes accepted as Chytridiomycetes
- Class Lobulomycetes accepted as Chytridiomycetes
- Class Mesochytriomycetes accepted as Chytridiomycetes
- Class Monoblepharidomycetes
- Class Neocallimastigomycetes
- Order Neocallimastigales
- Family Neocallimastigaceae
- Genus Anaeromyces A. Breton, A. Bernalier, M. Dusser, G. Fonty, B. Gaillard-Martinie & J. Guillot, 1990
- Genus Caecomyces J.J. Gold in J.J. Gold, I.B. Heath & T. Bauchop, 1988
- Species Caecomyces communis J.J. Gold, I.B. Heath & Bauchop, 1988
- Species Caecomyces equi J.J. Gold, 1988
- Genus Cyllamyces E. Ozkose, B.J. Thomas, D.R. Davies, G.W. Griffith & M.K. Theodorou, 2001
- Genus Neocallimastix J. Vavra & L. Joyon ex I.B. Heath in I.B. Heath et al., 1983
- Genus Orpinomyces D.J.S. Barr, H. Kudo, K.D. Jakober & K.J. Cheng, 1989
- Genus Piromyces J.J. Gold, I.B. Heath & T. Bauchop, 1988
- Genus Ruminomyces Y.W. Ho in Y.W. Ho et al., 1990 accepted as Anaeromyces A. Breton, A. Bernalier, M. Dusser, G. Fonty, B. Gaillard-Martinie & J. Guillot, 1990
- Class Olpidiomycetes accepted as Chytridiomycetes
- Class Polychytriomycetes accepted as Chytridiomycetes
- Class Rhizophlyctidomycetes accepted as Chytridiomycetes
- Class Rhizophydiomycetes
- Class Sanchytriomycetes
- Class Spizellomycetes accepted as Chytridiomycetes
- Class Synchytriomycetes accepted as Chytridiomycetes
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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