Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Order Arthoniales
- Family Andreiomycetaceae B.P. Hodkinson & J.C. Lendemer, 2013
- Family Arthoniaceae H.G.L. Reichenbach ex H.G.L. Reichenbach, 1841
- Family Arthoniales incertae sedis
- Family Chrysothricaceae
- Family Chrysotrichaceae accepted as Chrysothricaceae
- Family Opegraphaceae accepted as Roccellaceae Chevall., 1826
- Family Roccellaceae Chevall., 1826
- Genus Alyxoria S.F. Gray, 1821 accepted as Opegrapha E. Acharius, 1809
- Genus Ancistroporella G. Thor, 1994 accepted as Ancistrosporella G. Thor, 1995
- Genus Ancistrospora G. Thor, 1991 accepted as Ancistrosporella G. Thor, 1995
- Genus Ancistrosporella G. Thor, 1995
- Genus Angiactis A. Aptroot & L.B. Sparrius, 2008
- Genus Arthonaria E.M. Fries, 1825 accepted as Enterographa Fée, 1824
- Genus Arthoniactis (Vainio) Clements, 1909
- Genus Austrographa L.B. Sparrius, J.A. Elix & A.W. Archer, 2010 accepted as Austrographa L.B. Sparrius, J.A. Elix & A.W. Archer, 2013
- Genus Austrographa L.B. Sparrius, J.A. Elix & A.W. Archer, 2013
- Genus Austrographa L.B. Sparrius, J.A. Elix & A.W. Archer, 2011 accepted as Austrographa L.B. Sparrius, J.A. Elix & A.W. Archer, 2013
- Genus Austroroccella A. Tehler & D. Ertz in Tehler, Irestedt & Ertz, 2013
- Genus Bacidiactis M. Choisy, 1931 accepted as Lecanactis Körber, 1855
- Genus Bactrospora A. Massalongo, 1852
- Genus Bactrosporomyces Ciferri & Tomaselli, 1953 accepted as Bactrospora A. Massalongo, 1852
- Genus Camanchaca Follmann & Peine, 1999
- Genus Chiodecton Acharius, 1814
- Genus Chiodectonomyces Ciferri & Tomaselli, 1953 accepted as Enterographa Fée, 1824
- Genus Combea G. De Notaris, 1846
- Genus Cresponea J.M. Egea & P. Torrente, 1993
- Genus Cyrtographa J. Müller Arg., 1894 accepted as Minksia J. Müller Arg., 1882
- Genus Darbishirella A. Zahlbruckner in O.V. Darbishire, 1898 accepted as Ingaderia O.V. Darbishire, 1897
- Genus Delisea Fée, 1825 accepted as Plectocarpon Fée, 1825
- Genus Dendrographa O.V. Darbishire, 1895
- Genus Dichosporidium Patouillard, 1903
- Genus Dichosporium Patouillard, 1899 accepted as Dichosporidium Patouillard, 1903
- Genus Dictyographa O.V. Darbishire, 1897 accepted as Ingaderia O.V. Darbishire, 1897
- Genus Dictyographa J. Müller Arg., 1893 accepted as Opegrapha E. Acharius, 1809
- Genus Dimidiographa D. Ertz & A. Tehler, 2011
- Genus Diplogramma J. Müller Arg., 1891
- Genus Diplogrammatomyces Ciferri & Tomaselli, 1953 accepted as Diplogramma J. Müller Arg., 1891
- Genus Dirina E.M. Fries, 1825
- Genus Dirinopsis G. De Notaris, 1846 accepted as Dirina E.M. Fries, 1825
- Genus Dolichocarpus R. Santesson, 1949
- Genus Enterodictyon J. Müller Arg., 1892
- Genus Enterodictyonomyces Ciferri & Tomaselli, 1953 accepted as Enterodictyon J. Müller Arg., 1892
- Genus Enterodictyum Clements & Shear, 1931 accepted as Enterodictyon J. Müller Arg., 1892
- Genus Enterographa Fée, 1824
- Genus Epiphora Nylander, 1876 accepted as Plectocarpon Fée, 1825
- Species Epiphora encaustica Nyl., 1876
- Genus Erythrodecton G. Thor, 1991
- Genus Feigeana B. Mies, H.T. Lumbsch & A. Tehler, 1995
- Genus Follmanniella J. Peine & B. Werner in F.J.A. Daniels et al., 1995
- Genus Fouragea Trevisan, 1880 accepted as Opegrapha E. Acharius, 1809
- Genus Fulvophyton D. Ertz & A. Tehler, 2011
- Genus Gomphospora A. Massalongo, 1852 accepted as Schismatomma Flotow & Körber ex A. Massalongo, 1852
- Genus Gorgadesia Tavares, 1964
- Genus Graphidastra (K. Redinger) G. Thor, 1990
- Genus Gymnographoidea Fink in Hedrick, 1930 accepted as Mazosia A. Massalongo, 1854
- Genus Halographis J. Kohlmeyer & B. Volkmann-Kohlmeyer, 1988
- Genus Haplodina A. Zahlbruckner in Handel-Mazzetti, 1930
- Genus Hubbsia W.A. Weber, 1965
- Genus Hysterina (Acharius) S.F. Gray, 1821 accepted as Opegrapha E. Acharius, 1809
- Genus Ingaderia O.V. Darbishire, 1897
- Genus Lecanactiomyces Ciferri & Tomaselli, 1953 accepted as Lecanactis Körber, 1855
- Genus Lecanactis Körber, 1855
- Genus Lecanographa Egea & Torrente, 1994
- Genus Leciographa A. Massalongo, 1854 accepted as Opegrapha E. Acharius, 1809
- Genus Lecoglyphis Clements, 1909 accepted as Opegrapha E. Acharius, 1809
- Genus Lichenomyces Trevisan, 1853 accepted as Plectocarpon Fée, 1825
- Genus Lobodirina G. Follmann, 1967 accepted as Roccellina O.V. Darbishire, 1898
- Genus Mazosia A. Massalongo, 1854
- Genus Mazosiella
- Genus Melampydiomyces Ciferri & Tomaselli, 1953 accepted as Bactrospora A. Massalongo, 1852
- Genus Melampydium accepted as Bactrospora A. Massalongo, 1852
- Genus Melampylidium J. Stirton ex J. Müller Arg., 1894 accepted as Bactrospora A. Massalongo, 1852
- Genus Melanodecton A. Massalongo, 1860 accepted as Chiodecton Acharius, 1814
- Genus Micrographina Fink in Hedrick, 1930 accepted as Mazosia A. Massalongo, 1854
- Genus Minksia J. Müller Arg., 1882
- Genus Mycopegrapha Vainio, 1921 accepted as Opegrapha E. Acharius, 1809
- Genus Nemaria Navas, 1909 accepted as Roccella A.P. de Candolle in Lamarck & A.P. de Candolle, 1805
- Genus Neosergipea M.E.S. Cáceres, D. Ertz & A. Aptroot in Lücking, Gutiérrez & Moncada, 2016
- Genus Opegrapha E. Acharius, 1809
- Genus Opegraphella J. Müller Arg., 1890 accepted as Opegrapha E. Acharius, 1809
- Genus Opegraphoidea Fink in Hedrick, 1933 accepted as Opegrapha E. Acharius, 1809
- Genus Opegraphomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Opegrapha E. Acharius, 1809
- Genus Opgraphoidea accepted as Opegrapha E. Acharius, 1809
- Genus Paraingaderia D. Ertz & A. Tehler, 2011
- Genus Paralecanographa D. Ertz & A. Tehler, 2011
- Genus Paraschismatomma D. Ertz & A. Tehler, 2011
- Genus Pentagenella O.V. Darbishire, 1897
- Genus Perigrapha Hafellner, 1996
- Genus Peterjamesia D. Hawksworth, 2006 accepted as Roccellographa J. Steiner, 1902
- Genus Phoebus R.C. Harris & Ladd, 2007
- Genus Phragmographum P. Hennings, 1905 accepted as Opegrapha E. Acharius, 1809
- Genus Phyllographa (J. Müller Arg.) V.J.P.B. Räsänen, 1943 accepted as Opegrapha E. Acharius, 1809
- Genus Plagiographis C. Knight & Mitten, 1860 accepted as Opegrapha E. Acharius, 1809
- Genus Platygramma W.A. Leighton, 1854 accepted as Enterographa Fée, 1824
- Genus Platygrapha Nylander, 1855 accepted as Schismatomma Flotow & Körber ex A. Massalongo, 1852
- Genus Platygraphis J.D. Hooker, 1867 accepted as Schismatomma Flotow & Körber ex A. Massalongo, 1852
- Genus Platygraphomyces Ciferri & Tomaselli, 1953 accepted as Schismatomma Flotow & Körber ex A. Massalongo, 1852
- Genus Plectocarpon Fée, 1825
- Genus Protoroccella L.M. Sánchez-Pinto & M. Schulz, 2001
- Genus Protoroccella Follmann, 2001
- Genus Pseudolecanactis A. Zahlbruckner in Rechinger, 1907
- Genus Pulvinodecton A. Henssen & G. Thor, 1998
- Genus Pyrenotea E.M. Fries, 1821 accepted as Lecanactis Körber, 1855
- Genus Reinkella O.V. Darbishire, 1897
- Genus Reinkellomyces Ciferri & Tomaselli, 1953 accepted as Reinkella O.V. Darbishire, 1897
- Genus Roccella A.P. de Candolle in Lamarck & A.P. de Candolle, 1805
- Genus Roccellaria O.V. Darbishire, 1897
- Genus Roccellina O.V. Darbishire, 1898
- Genus Roccellodea O.V. Darbishire, 1932
- Genus Roccellographa J. Steiner, 1902
- Genus Roccellographomyces Ciferri & Tomaselli, 1953 accepted as Roccellographa J. Steiner, 1902
- Genus Roccellomyces E.A. Thomas ex Ciferri & Tomaselli, 1953 accepted as Roccella A.P. de Candolle in Lamarck & A.P. de Candolle, 1805
- Genus Roccellopsis A.A. Elenkin, 1929 accepted as Roccella A.P. de Candolle in Lamarck & A.P. de Candolle, 1805
- Genus Rotula (J. Müller Arg.) J. Müller Arg., 1890 accepted as Mazosia A. Massalongo, 1854
- Genus Rotularia (Vainio) A. Zahlbruckner, 1923 accepted as Mazosia A. Massalongo, 1854
- Genus Sagenidium J. Stirton, 1877
- Genus Schismatomma Flotow & Körber ex A. Massalongo, 1852
- Genus Schismatommatomyces Ciferri & Tomaselli, 1953 accepted as Schismatomma Flotow & Körber ex A. Massalongo, 1852
- Genus Schizopelte Th. Fries, 1875
- Genus Schizopeltomyces Ciferri & Tomaselli, 1953 accepted as Schizopelte Th. Fries, 1875
- Genus Sclerographa (Vainio) A. Zahlbruckner, 1923 accepted as Opegrapha E. Acharius, 1809
- Genus Sclerophyton Eschweiler, 1824
- Genus Sclerophytonomyces Ciferri & Tomaselli, 1953 accepted as Roccellographa J. Steiner, 1902
- Genus Sclerophytonomyces Ciferri & Tomaselli ex Sparrius, 2004 accepted as Roccellographa J. Steiner, 1902
- Genus Scolecactis F.E. Clements, 1909 accepted as Bactrospora A. Massalongo, 1852
- Genus Sergipea M.E.S. Cáceres, D. Ertz & A. Aptroot in Aptroot, Jesus, Ertz, Lima, Maia & Cáceres, 2013 accepted as Neosergipea M.E.S. Cáceres, D. Ertz & A. Aptroot in Lücking, Gutiérrez & Moncada, 2016
- Genus Sigridea A. Tehler, 1993
- Genus Simonyella J. Steiner, 1902
- Genus Sipmania Egea & Torrente, 1994
- Genus Sparria D. Ertz & A. Tehler, 2011
- Genus Stigmatella W. Mudd, 1861 accepted as Roccellographa J. Steiner, 1902
- Genus Stigmatidium G.F.W. Meyer, 1825 accepted as Enterographa Fée, 1824
- Genus Streimannia G. Thor, 1990
- Genus Syncesia T. Taylor in Mackay, 1836
- Genus Thamnium Ventenat, 1799 accepted as Roccella A.P. de Candolle in Lamarck & A.P. de Candolle, 1805
- Genus Xylastra A. Massalongo, 1855 accepted as Opegrapha E. Acharius, 1809
- Genus Zwackhia Körber, 1855 accepted as Opegrapha E. Acharius, 1809
- Order Arthoniomycetidae incertae sedis
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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