Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Phylum Acanthocephala
- Phylum Agmata †
- Phylum Animalia (awaiting allocation)
- Phylum Animalia incertae sedis
- Phylum Annelida
- Phylum Arthropoda
- Phylum Brachiopoda
- Phylum Bryozoa
- Phylum Cephalorhyncha incertae sedis
- Phylum Chaetognatha
- Phylum Chitinozoa †
- Phylum Chordata
- Subphylum Cephalochordata
- Subphylum Tunicata accepted as Urochordata
- Subphylum Urochordata
- Subphylum Vertebrata
- Superclass Tetrapoda
- Class Acanthodii †
- Class Actinopterygii
- Order Acanthomorpha
- Order Acipenseriformes
- Order Actinopterygii (awaiting allocation)
- Order Actinopterygii incertae sedis
- Order Aeduelliformes †
- Order Albuliformes
- Order Alepisauriformes
- Order Amiiformes
- Order Anguilliformes
- Order Ankylophoriformes †
- Order Argentiniformes
- Order Asarotiformes †
- Order Ascalaboidiformes †
- Order Aspidorhynchiformes †
- Order Ateleopodiformes
- Order Atheriniformes
- Order Aulopiformes
- Order Batrachoidiformes
- Order Beloniformes
- Order Beryciformes
- Order Bobasatraniformes † accepted as Bobasatraniiformes †
- Order Bobasatraniiformes †
- Order Catervarioliformes †
- Order Cephaloxeniformes †
- Order Cetomimiformes
- Order Characiformes
- Order Cheirolepiformes †
- Order Clupeiformes
- Order Clupeocephala incertae sedis
- Order Clupeomorpha incertae sedis
- Order Crossognathiformes †
- Order Ctenothrissiformes †
- Order Cypriniformes
- Order Cyprinodontiformes
- Order Dactylopteriformes accepted as Syngnathiformes
- Order Dapediiformes †
- Order Discordichthyiformes †
- Order Dorsetichthyiformes †
- Order Dorypteriformes †
- Order Ellimmichthyiformes †
- Order Elonichthyiformes †
- Order Elopiformes
- Order Esociformes
- Order Eurynotoidiformes †
- Order Euteleostei incertae sedis
- Order Gadiformes
- Order Gasterosteiformes
- Order Gobiesociformes
- Order Gobiiformes
- Order Gonorhynchiformes accepted as Gonorynchiformes
- Order Gonorynchiformes
- Order Guildayichthyiformes †
- Order Gymnotiformes
- Order Halecomorphi incertae sedis
- Order Haplolepidiformes †
- Order Holocentriformes
- Order Ichthyodectiformes †
- Order Ionoscopiformes †
- Order Kyphosichthyiformes †
- Order Lampriformes
- Order Lepisosteiformes
- Order Leptolepidiformes †
- Order Lophiiformes
- Order Louwoichthyiformes †
- Order Luganoiiformes †
- Order Lycopteriformes †
- Order Macrosemiiformes †
- Order Megalopiformes accepted as Elopiformes
- Order Mormyriformes accepted as Osteoglossiformes
- Order Myctophiformes
- Order Neopterygii incertae sedis
- Order Notacanthiformes
- Order Ophidiiformes
- Order Ophiopsiformes †
- Order Ophisthomi †
- Order Osmeriformes
- Order Osteoglossiformes
- Order Osteoglossomorpha incertae sedis
- Order Pachycormiformes †
- Order Palaeonisciformes †
- Order Palaeoniscimorpha incertae sedis
- Order Palaeoniscoidea † accepted as Palaeonisciformes †
- Order Paleonisciformes † accepted as Palaeonisciformes †
- Order Panxianichthyformes †
- Order Paphosisciformes †
- Order Parasemionotiformes †
- Order Pattersonichthyiformes †
- Order Peltopleuriformes †
- Order Perciformes
- Family Acanthoclinidae Gunther, 1861 accepted as Plesiopidae Gunther, 1861
- Family Acanthuridae Bonaparte, 1835
- Family Acropomatidae Gill, 1893
- Family Aenigmachannidae Britz, Dahanukar, Anoop, Philip, Clark, Raghavan & Ruber, 2020
- Family Amarsipidae Haedrich, 1969
- Family Ambassidae Klunzinger, 1870
- Family Ammodytidae Bonaparte, 1835
- Family Amphistiidae †
- Family Anabantidae Bonaparte, 1831
- Family Anarhichadidae Bonaparte, 1835
- Family Anarhichatidae accepted as Anarhichadidae Bonaparte, 1835
- Family Anisochromidae Smith, 1954 accepted as Pseudochromidae Müller & Troschel, 1849
- Family Aplodactylidae Gunther, 1859
- Family Apogonidae Gunther, 1859
- Family Ariommatidae Haedrich, 1967
- Family Arripidae Gill, 1893
- Family Artedidraconidae Andriashev, 1967
- Family Asianthidae Sytchevskaya & Prokofiev, 2003 †
- Family Badidae Barlow, Liem & Wickler, 1968
- Family Banjosidae Jordan & THompson, 1912
- Family Bathyclupeidae Gill, 1896
- Family Bathydraconidae Regan, 1913
- Family Bathymasteridae Jordan & Gilbert, 1883
- Family Belontiidae Liem, 1962 accepted as Osphronemidae van der Hoeven, 1832
- Family Blenniidae Rafinesque, 1810
- Family Blochiidae †
- Family Bovichthyidae accepted as Bovichtidae Gill, 1862
- Family Bovichtidae Gill, 1862
- Family Bramidae Bonaparte, 1831
- Family Branchiostegidae Jordan, 1923 accepted as Malacanthidae Poey, 1861
- Family Caesionidae Bonaparte, 1831
- Family Caesioscorpididae Parenti & Randall, 2020
- Family Callanthiidae Ogilby, 1899
- Family Callionymidae Bonaparte, 1831
- Family Caproidae Bonaparte, 1835
- Family Carangidae Rafinesque, 1815
- Family Caristiidae Gill & Smith, 1905
- Family Centracanthidae Gill, 1893
- Family Centrarchidae Bleeker, 1859
- Family Centrogeniidae Fowler, 1907 accepted as Centrogenyidae Fowler, 1907
- Family Centrogenyidae Fowler, 1907
- Family Centrolophidae Bonaparte, 1846
- Family Centropomidae Poey, 1867
- Family Cepolidae Rafinesque, 1815
- Family Chaenichthyidae Gill, 1861 accepted as Channichthyidae Gill, 1861
- Family Chaenopsidae Gill, 1865
- Family Chaetodontidae Rafinesque, 1815
- Family Champsodontidae Jordan & Snyder, 1902
- Family Chandidae Fowler, 1905 accepted as Ambassidae Klunzinger, 1870
- Family Channichthyidae Gill, 1861
- Family Channichtyidae accepted as Channichthyidae Gill, 1861
- Family Channidae Fowler, 1934
- Family Cheilodactylidae Bonaparte, 1850
- Family Cheimarrhichthyidae accepted as Cheimarrichthyidae Regan, 1913
- Family Cheimarrichthyidae Regan, 1913
- Family Chiasmodontidae Jordan & Gilbert, 1883
- Family Chironemidae Gill, 1862
- Family Cichlidae Bonaparte, 1835
- Family Cirrhitidae MacLeay, 1841
- Family Clinidae Swainson, 1839
- Family Coiidae Fowler, 1905 accepted as Anabantidae Bonaparte, 1831
- Family Congrogadidae Gunther, 1862 accepted as Pseudochromidae Müller & Troschel, 1849
- Family Coracinidae Fowler, 1933 accepted as Dichistiidae Smith, 1935
- Family Coryphaenidae Rafinesque, 1815
- Family Creediidae Waite, 1899
- Family Cryptacanthodidae Gill, 1861
- Family Dactyloscopidae Gill, 1859
- Family Datnioididae Fowler, 1931
- Family Dichistiidae Smith, 1935
- Family Dinolestidae Whitley, 1948
- Family Dinopercidae Heemstra & Hecht, 1986
- Family Draconettidae Jordan & Fowler, 1903
- Family Drepaneidae Gill, 1872
- Family Drepanidae Gill, 1872 accepted as Drepaneidae Gill, 1872
- Family Echeneidae Rafinesque, 1810
- Family Echeneididae accepted as Echeneidae Rafinesque, 1810
- Family Eleginopidae Gill, 1893 accepted as Eleginopsidae Gill, 1893
- Family Eleginopsidae Gill, 1893
- Family Eleotrididae Bonaparte, 1835 accepted as Eleotridae Bonaparte, 1835
- Family Embiotocidae Agassiz, 1853
- Family Emmelichthyidae Poey, 1867
- Family Enoplosidae Gill, 1893
- Family Eocottidae Bannikov, 2004 †
- Family Ephippidae Bleeker, 1859
- Family Ephippididae accepted as Ephippidae Bleeker, 1859
- Family Epigonidae Poey, 1861
- Family Euzaphlegidae †
- Family Formionidae McCulloch, 1929 accepted as Carangidae Rafinesque, 1815
- Family Gadopsidae Gunther, 1862 accepted as Percichthyidae Jordan & Eigenman, 1890
- Family Gempylidae Gill, 1862
- Family Gerreidae Bleeker, 1859
- Family Girellidae Gill, 1862 accepted as Kyphosidae Jordan, 1887
- Family Glaucosomatidae Jordan & Thompson, 1911
- Family Gobioididae Jordan & Eigenmann, 1887 accepted as Gobiidae Cuvier, 1816
- Family Grammatidae Jordan, 1887
- Family Grammistidae Bleeker, 1857 accepted as Serranidae Swainson, 1839
- Family Haemulidae Gill, 1885
- Family Hapalogenyidae Parenti, 2019
- Family Harpagiferidae Gill, 1861
- Family Helostomatidae Gill, 1872
- Family Hemilutjanidae Parenti & Randall, 2020
- Family Howellidae Ogilby, 1899
- Family Icosteidae Jordan & Gilbert, 1880
- Family Inermiidae Jordan, 1923 accepted as Haemulidae Gill, 1885
- Family Istiophoridae Rafinesque, 1815
- Family Kraemeriidae Whitley, 1935
- Family Kuhliidae Jordan & Evermann, 1896
- Family Kurtidae Bleeker, 1859
- Family Kyphosidae Jordan, 1887
- Family Labracoglossidae Regan, 1913 accepted as Kyphosidae Jordan, 1887
- Family Labridae Cuvier, 1816
- Family Labrisomidae Hubbs, 1952
- Family Lactariidae Boulenger, 1904
- Family Lateolabracidae Ghedotti, Davis & Smith, 2018
- Family Latidae Jordan, 1888
- Family Latridae Gill, 1862
- Family Latrididae Gill, 1862 accepted as Latridae Gill, 1862
- Family Leiognathidae Gill, 1893
- Family Leptobramidae Ogilby, 1913
- Family Leptoscopidae Gill, 1859
- Family Lethrinidae Bonaparte, 1831
- Family Limnichthyidae Regan, 1913 accepted as Creediidae Waite, 1899
- Family Lobotidae Gill, 1861
- Family Luciocephalidae Bleeker, 1852 accepted as Osphronemidae van der Hoeven, 1832
- Family Lutianidae accepted as Lutjanidae Gill, 1861
- Family Lutjanidae Gill, 1861
- Family Luvaridae Gill, 1885
- Family Malacanthidae Poey, 1861
- Family Massalongiidae Tyler & Bannikov, 2005 †
- Family Menidae Fitzinger, 1873
- Family Microdesmidae Regan, 1912
- Family Monodactylidae Jordan & Evermann, 1898
- Family Moronidae Jordan & Evermann, 1896
- Family Mugilidae Jarocki, 1822
- Family Mugiloididae Jordan, 1923 accepted as Pinguipedidae Gunther, 1860
- Family Mullidae Rafinesque, 1815
- Family Nandidae Bleeker, 1852
- Family Nardoichthyidae Sorbini & Bannikov, 1991 †
- Family Nematistiidae Gill, 1862
- Family Nemipteridae Regan, 1913
- Family Nomeidae Gunther, 1860
- Family Notograptidae Regan, 1912 accepted as Plesiopidae Gunther, 1861
- Family Nototheniidae Gunther, 1861
- Family Notothenioidei incertae sedis
- Family Odacidae Gunther, 1861
- Family Ophiclinidae Jordan, 1923 accepted as Clinidae Swainson, 1839
- Family Opisthognathidae accepted as Opistognathidae Bonaparte, 1835
- Family Opistognathidae Bonaparte, 1835
- Family Oplegnathidae Bleeker, 1853
- Family Osphronemidae van der Hoeven, 1832
- Family Ostracoberycidae Fowler, 1934
- Family Owstoniidae Jordan, Tanaka & Snyder, 1913 accepted as Cepolidae Rafinesque, 1815
- Family Palaeorhynchidae †
- Family Paleorhynchidae † accepted as Palaeorhynchidae †
- Family Parapercidae Bleeker, 1872 accepted as Pinguipedidae Gunther, 1860
- Family Parascorpididae Smith, 1949
- Family Pempheridae Bleeker, 1859
- Family Pempherididae accepted as Pempheridae Bleeker, 1859
- Family Pentacerotidae Bleeker, 1859
- Family Pentapodidae Fowler, 1933 accepted as Nemipteridae Regan, 1913
- Family Percichthyidae Jordan & Eigenman, 1890
- Family Percidae Rafinesque, 1815
- Family Perciformes (awaiting allocation)
- Family Perciliidae Jordan, 1923
- Family Percoidei incertae sedis
- Family Percophidae Swainson, 1839
- Family Percophididae Gill, 1885 accepted as Percophidae Swainson, 1839
- Family Peronedyidae Jordan, 1923 accepted as Clinidae Swainson, 1839
- Family Pholidae Gill, 1893
- Family Pholidichthyidae Jordan, 1896
- Family Pholidichtyidae accepted as Pholidichthyidae Jordan, 1896
- Family Pholididae Gill, 1893 accepted as Pholidae Gill, 1893
- Family Pinguipedidae Gunther, 1860
- Family Pirskeniidae Obrhelová, 1961 †
- Family Plesiopidae Gunther, 1861
- Family Polycentridae Gill, 1858
- Family Polynemidae Rafinesque, 1815
- Family Polyprionidae Bleeker, 1874
- Family Pomacanthidae Jordan & Evermann, 1898
- Family Pomacentridae Bonaparte, 1831
- Family Pomadasyidae Regan, 1913 accepted as Haemulidae Gill, 1885
- Family Pomatomidae Gill, 1863
- Family Priacanthidae Gunther, 1859
- Family Pristolepididae Regan, 1913
- Family Pseudaphritidae McCulloch, 1929
- Family Pseudochromidae Müller & Troschel, 1849
- Family Pseudogrammatidae Fowler, 1931 accepted as Serranidae Swainson, 1839
- Family Pseudoplesiopidae Bleeker, 1875 accepted as Pseudochromidae Müller & Troschel, 1849
- Family Ptereleotridae Bleeker, 1875 accepted as Microdesmidae Regan, 1912
- Family Ptilichthyidae Jordan & Gilbert, 1883
- Family Rachycentridae Gill, 1896
- Family Repropcidae Bannikov, 1991 †
- Family Rhinoprenidae Munro, 1964 accepted as Ephippidae Bleeker, 1859
- Family Robertanniidae Bannikov, 2011 †
- Family Salwaichthyidae Bannikov, 2020 †
- Family Scaridae Rafinesque, 1810
- Family Scatophagidae Gill, 1883
- Family Schindleriidae Giltay, 1934
- Family Sciaenidae Gill, 1861
- Family Scombridae Rafinesque, 1815
- Family Scombrolabracidae Fowler, 1925
- Family Scombropidae Gill, 1862
- Family Scorpididae Gunther, 1860 accepted as Kyphosidae Jordan, 1887
- Family Scytalinidae Jordan & Starks, 1895
- Family Serranidae Swainson, 1839
- Genus Aethaloperca Fowler, 1904
- Genus Aetheloperca accepted as Aethaloperca Fowler, 1904
- Genus Aetholoperca accepted as Aethaloperca Fowler, 1904
- Genus Allomorone Frizzell & Dante, 1965 †
- Genus Alphestes Bloch & Schneider, 1801
- Genus Altiserranus Whitley, 1947 accepted as Epinephelus Bloch, 1793
- Genus Anatolanthias Anderson, Parin & Randall, 1990
- Genus Ancheas Gray, 1859 accepted as Anthias Bloch, 1792
- Genus Anhyperodon Boulenger, 1895 accepted as Anyperodon Günther, 1859
- Genus Anthias Bloch, 1792
- Genus Anthiasicus Ginsburg, 1952 accepted as Hemanthias Steindachner, 1875
- Genus Anthisa accepted as Anthias Bloch, 1792
- Genus Anyperodon Günther, 1859
- Genus Aporops Schultz, 1943
- Genus Archoperca Jordan & Evermann, 1896 accepted as Mycteroperca Gill, 1862
- Genus Athaloperca accepted as Aethaloperca Fowler, 1904
- Genus Atractoperca Gill, 1861 accepted as Paralabrax Girard, 1856
- Genus Aulacocephalus Temminck & Schlegel, 1843
- Genus Aylopon Rafinesque, 1810 accepted as Anthias Bloch, 1792
- Genus Baldwinella Anderson & Heemstra, 2012
- Genus Bathyanthias Günther, 1880
- Genus Belonoperca Fowler & Bean, 1930
- Genus Bonaci accepted as Mycteroperca Gill, 1862
- Genus Brachyrhinus Gill, 1862 accepted as Paranthias Guichenot, 1868
- Genus Bullisichthys Rivas, 1971
- Genus Caesioperca Castelnau, 1872
- Genus Callidulus Fowler, 1907 accepted as Dules Cuvier in Cuvier & Valenciennes, 1829
- Genus Caprodon Temminck & Schlegel in Siebold, 1843
- Genus Caribrhegma Breder, 1927 accepted as Pseudogramma Bleeker, 1875
- Genus Centristhmus Garman, 1899 accepted as Hemanthias Steindachner, 1875
- Genus Centropristes Cuvier & Valenciennes, 1829 accepted as Centropristis Cuvier, 1829
- Genus Centropristis Cuvier, 1829
- Genus Cephalopholis Bloch & Schneider, 1801
- Genus Cephalopolis accepted as Cephalopholis Bloch & Schneider, 1801
- Genus Cepholopholis accepted as Cephalopholis Bloch & Schneider, 1801
- Genus Cerna Bonaparte, 1833 accepted as Epinephelus Bloch, 1793
- Genus Cernua Agassiz, 1846 accepted as Cerna Bonaparte, 1833
- Genus Cernua Costa, 1849 accepted as Epinephelus Bloch, 1793
- Genus Chelidoperca Boulenger, 1895
- Genus Chenia Fowler, 1958 accepted as Othos Castelnau, 1875
- Genus Cherna accepted as Chenia Fowler, 1958
- Genus Choranthias Anderson & Heemstra, 2012
- Genus Choristidium Parenti & Randall, 2020 accepted as Chorististium Gill, 1862
- Genus Chorististium Gill, 1862 accepted as Liopropoma Gill, 1861
- Genus Chorististum Gill, 1862 accepted as Chorististium Gill, 1862
- Genus Chromidoleptes Agassiz, 1846 accepted as Chromileptes Swainson, 1839
- Genus Chromileptes Swainson, 1839
- Genus Chrysomelanus Plumier in Lacepède, 1802 accepted as Epinephelus Bloch, 1793
- Genus Colpognathus Klunzinger, 1879 accepted as Othos Castelnau, 1875
- Genus Compsanthias Gill, 2024
- Genus Corvina Cuvier, 1829 accepted as Sciaena Linnaeus, 1758
- Genus Cratinus Steindachner, 1878
- Genus Creolus Jordan & Gilbert, 1883 accepted as Brachyrhinus Gill, 1862
- Genus Cretaserranus Schwarzhans & Jagt, 2021 †
- Genus Cromileptes Swainson, 1839 accepted as Chromileptes Swainson, 1839
- Genus Cromileptis accepted as Cromileptes Swainson, 1839
- Genus Cugupuguacu Catesby, 1771 accepted as Epinephelus Bloch, 1793
- Genus Cynichthys Swainson, 1839 accepted as Epinephelus Bloch, 1793
- Genus Daba Forsskål, 1775 accepted as Epinephelus Bloch, 1793
- Genus Dactylanthias Bleeker, 1871
- Genus Dapalis Gistl, 1848 †
- Genus Dermatolepis Gill, 1861
- Genus Diplectron Troschel, 1858 accepted as Diplectrum Holbrook, 1855
- Genus Diplectrum Holbrook, 1855
- Genus Diploprion Cuvier in Cuvier & Valenciennes, 1828
- Genus Diploprion Kuhl & Hasselt, 1828 accepted as Diploprion Cuvier in Cuvier & Valenciennes, 1828
- Genus Doules accepted as Dules Cuvier in Cuvier & Valenciennes, 1829
- Genus Dules Cuvier in Cuvier & Valenciennes, 1829
- Genus Dulichethys Swainson, 1838 accepted as Dules Cuvier in Cuvier & Valenciennes, 1829
- Genus Dulichthys Bonaparte, 1831 accepted as Dules Cuvier in Cuvier & Valenciennes, 1829
- Genus Eleutheractis Cope, 1871 accepted as Rypticus Cuvier, 1829
- Genus Ellerkeldia Whitley, 1927 accepted as Hypoplectrodes Gill, 1862
- Genus Emmelanthias Smith, 1955 accepted as Nemanthias Smith, 1954
- Genus Enneacentrus Gill, 1865 accepted as Cephalopholis Bloch & Schneider, 1801
- Genus Enneistus Jordan & Evermann, 1896 accepted as Epinephelus Bloch, 1793
- Genus Entoanthias accepted as Entonanthias Jordan & Tanaka, 1927
- Genus Entonanthias Jordan & Tanaka, 1927 accepted as Pseudanthias Bleeker, 1871
- Genus Ephinephelus accepted as Epinephelus Bloch, 1793
- Genus Epinelephus Cuvier, 1800 accepted as Epinephelus Bloch, 1793
- Genus Epinelhelus accepted as Epinephelus Bloch, 1793
- Genus Epinephalus Jenkins, 1887 accepted as Epinephelus Bloch, 1793
- Genus Epinephelides Ogilby, 1899
- Genus Epinephelis accepted as Epinephelus Bloch, 1793
- Genus Epinephelus Bloch, 1793
- Genus Eudulus Fowler, 1907 accepted as Dules Cuvier in Cuvier & Valenciennes, 1829
- Genus Fares Guichenot, 1835 accepted as Epinephelus Bloch, 1793
- Genus Flagelloserranus Kotthaus, 1970 accepted as Liopropoma Gill, 1861
- Genus Franzia Jordan & Thompson, 1914 accepted as Pseudanthias Bleeker, 1871
- Genus Garrupa Jordan in Jordan & Eigenmann, 1890 accepted as Epinephelus Bloch, 1793
- Genus Gerranus Bennett, 1830 accepted as Serranus Cuvier, 1816
- Genus Giganthias Katayama, 1954
- Genus Gilbertella Waite, 1902 accepted as Epinephelides Ogilby, 1899
- Genus Gilbertia Jordan in Jordan & Eigenmann, 1890 accepted as Hypoplectrodes Gill, 1862
- Genus Gnathypops Gill, 1862 accepted as Opistognathus Cuvier, 1816
- Genus Gonioperca Gill, 1862 accepted as Paralabrax Girard, 1856
- Genus Gonioplectrus Gill, 1862
- Genus Gracila Randall, 1964
- Genus Gracilia accepted as Gracila Randall, 1964
- Genus Gramistes Fleming, 1822 accepted as Grammistes Bloch & Schneider, 1801
- Genus Grammiste accepted as Grammistes Bloch & Schneider, 1801
- Genus Grammistes Bloch & Schneider, 1801
- Genus Grammistops Schultz in Schultz, Herald, Lachner, Welander & Woods, 1953
- Genus Haliperca Gill, 1862 accepted as Diplectrum Holbrook, 1855
- Genus Hemanthias Steindachner, 1875
- Genus Hemianthias Steindachner in Jordan, 1896 accepted as Hemanthias Steindachner, 1875
- Genus Hemilutjanus Bleeker, 1876
- Genus Hepatus Artedi in Röse, 1793 accepted as Serranus Cuvier, 1816
- Genus Holanthias Günther, 1868
- Genus Homalogrystes Alleyne & Macleay, 1877 accepted as Epinephelus Bloch, 1793
- Genus Hypoplectrodes Gill, 1862
- Genus Hypoplectrus Gill, 1861
- Genus Hypoplectus accepted as Hypoplectrus Gill, 1861
- Genus Hyporthodus Gill, 1861
- Genus Hyposerranus Klunzinger, 1884 accepted as Epinephelus Bloch, 1793
- Genus Isobuna Jordan in Jordan & Herre, 1907 accepted as Plectranthias Bleeker, 1873
- Genus Itaiara Vaillant & Bocourt, 1878 accepted as Epinephelus Bloch, 1793
- Genus Jeboehlkia Robins, 1967
- Genus Labracopsis Steindachner & Döderlein, 1883 accepted as Liopropoma Gill, 1861
- Genus Labroperca Gill, 1862 accepted as Epinephelus Bloch, 1793
- Genus Lacepedia Castelnau, 1873 accepted as Caesioperca Castelnau, 1872
- Genus Lepidoperca Regan, 1914
- Genus Leptanthias Tanaka, 1918 accepted as Pseudanthias Bleeker, 1871
- Genus Lioperca Gill, 1862 accepted as Dermatolepis Gill, 1861
- Genus Liopoproma accepted as Liopropoma Gill, 1861
- Genus Liopropoma Gill, 1861
- Genus Louti Forsskål, 1775 accepted as Variola Swainson, 1839
- Genus Luzonichthys Herre, 1936
- Genus Meganthias Randall & Heemstra, 2006
- Genus Menephorus Poey, 1871 accepted as Paranthias Guichenot, 1868
- Genus Mentiperca Gill, 1862 accepted as Serranus Cuvier, 1816
- Genus Merou Bonaparte, 1831 accepted as Epinephelus Bloch, 1793
- Genus Merus Poey, 1871 accepted as Epinephelus Bloch, 1793
- Genus Mikrolabrichthys accepted as Mirolabrichthys Herre, 1927
- Genus Mirolabrichthys Herre, 1927 accepted as Pseudanthias Bleeker, 1871
- Genus Mirolabrichtys accepted as Mirolabrichthys Herre, 1927
- Genus Mustelichthys Tanaka, 1917 accepted as Tosana Smith & Pope, 1906
- Genus Mycteroperca Gill, 1862
- Genus Naurua Whitley & Colefax, 1938 accepted as Luzonichthys Herre, 1936
- Genus Neanthias Norman, 1931 accepted as Serranus Cuvier, 1816
- Genus Neanthias Steindachner, 1880 accepted as Neoanthias Castelnau, 1879
- Genus Nemanthias Smith, 1954
- Genus Neoanthias Castelnau, 1879 accepted as Caprodon Temminck & Schlegel in Siebold, 1843
- Genus Niphon Cuvier in Cuvier & Valenciennes, 1828
- Genus Notognidion Rafinesque, 1810
- Genus Novanthias Whitley, 1937 accepted as Serranus Cuvier, 1816
- Genus Ocyanthias Jordan & Evermann, 1896 accepted as Holanthias Günther, 1868
- Genus Odontanthias Bleeker, 1873
- Genus Odontolabrax Bleeker, 1873
- Genus Oligorus Günther, 1859 accepted as Maccullochella Whitley, 1929
- Genus Othos Castelnau, 1875
- Genus Pacificogramma Kharin, 1983 accepted as Pronotogrammus Gill, 1863
- Genus Paleoserranus Cantalice, Alvarado-Ortega & Alaniz-Galvan, 2018 †
- Genus Paracanthistius Bleeker, 1874 accepted as Plectropomus Oken, 1817
- Genus Paracentropristis Klunzinger, 1884 accepted as Serranus Cuvier, 1816
- Genus Paracirrhites Steindachner in Steindachner & Döderlein, 1883 accepted as Plectranthias Bleeker, 1873
- Genus Paralabrax Girard, 1856
- Genus Parancanthistius Weber, 1913 accepted as Paracanthistius Bleeker, 1874
- Genus Paranthias Guichenot, 1868
- Genus Paraserranus Bleeker, 1874 accepted as Diplectrum Holbrook, 1855
- Genus Parasphyraenops Bean, 1912
- Genus Parepinephelus Bleeker, 1874 accepted as Mycteroperca Gill, 1862
- Genus Pelontrus Smith, 1961 accepted as Plectranthias Bleeker, 1873
- Genus Petrometopon Gill, 1865 accepted as Cephalopholis Bloch & Schneider, 1801
- Genus Phaetonichthys Bleeker, 1875 accepted as Cephalopholis Bloch & Schneider, 1801
- Genus Phrynotitan Gill, 1885 accepted as Epinephelus Bloch, 1793
- Genus Pikea Steindachner, 1875 accepted as Liopropoma Gill, 1861
- Genus Planctanthias Fowler, 1935 accepted as Pseudanthias Bleeker, 1871
- Genus Plectranthias Bleeker, 1873
- Genus Plectropoma Quoy & Gaimard, 1824 accepted as Plectropomus Oken, 1817
- Genus Plectropoma Fleming, 1822 accepted as Plectropomus Oken, 1817
- Genus Plectropomus Bosc, 1818 accepted as Plectropomus Oken, 1817
- Genus Plectropomus Oken, 1817
- Genus Plesioserranus Casier, 1966 †
- Genus Pleuroperca Fowler & Bean, 1930 accepted as Plectropomus Oken, 1817
- Genus Pogonaperca accepted as Pogonoperca Günther, 1859
- Genus Pogonoperca Günther, 1859
- Genus Priacanthichthys Day, 1868 accepted as Epinephelus Bloch, 1793
- Genus Prionodes Jenyns, 1840 accepted as Serranus Cuvier, 1816
- Genus Promicrops Poey (ex Gill), 1868 accepted as Epinephelus Bloch, 1793
- Genus Promicropterus Gill, 1861 accepted as Rypticus Cuvier, 1829
- Genus Pronotogrammus Gill, 1863
- Genus Properca Sauvage, 1880 †
- Genus Prospinus Poey, 1861 accepted as Alphestes Bloch & Schneider, 1801
- Genus Pseudanthias Bleeker, 1871
- Genus Pseudogramma Bleeker, 1875
- Genus Pseudogrammus accepted as Pseudogramma Bleeker, 1875
- Genus Pseudolabrax Schwarzhans, Stringer & Takeuchi, 2024 †
- Genus Pseudorhegma Schultz, 1966 accepted as Pseudogramma Bleeker, 1875
- Genus Pseudoserranus Klunzinger, 1870 accepted as Variola Swainson, 1839
- Genus Pteranthias Weber, 1913 accepted as Plectranthias Bleeker, 1873
- Genus Ptertopomus Cuvier in Goldfuss, 1820 accepted as Plectropomus Oken, 1817
- Genus Pyronotanthias Gill, 2022
- Genus Rabaulichthys Allen, 1984
- Genus Rainfordia McCulloch, 1923
- Genus Rhegma Gilbert in Jordan & Evermann, 1900 accepted as Pseudogramma Bleeker, 1875
- Genus Rhypticus Agassiz, 1846 accepted as Rypticus Cuvier, 1829
- Genus Rosanthias Tanaka, 1917 accepted as Pseudanthias Bleeker, 1871
- Genus Rypticus Cuvier, 1829
- Genus Sacura Jordan & Richardson, 1910
- Genus Saloptia Smith, 1964
- Genus Sayonara Jordan & Seale, 1906 accepted as Plectranthias Bleeker, 1873
- Genus Scalantarus Smith, 1965 accepted as Odontanthias Bleeker, 1873
- Genus Schistorus Gill, 1862 accepted as Hyporthodus Gill, 1861
- Genus Schultzea Woods, 1958
- Genus Schultzetta Whitley, 1965 accepted as Schultzea Woods, 1958
- Genus Scopularia de Buen, 1959 accepted as Hypoplectrodes Gill, 1862
- Genus Selenanthias Tanaka, 1918
- Genus Serranellus Jordan in Jordan & Eigenmann, 1890 accepted as Serranus Cuvier, 1816
- Genus Serranichthys Bleeker, 1855 accepted as Chromileptes Swainson, 1839
- Genus Serraniculus Ginsburg, 1952
- Genus Serranidarum †
- Genus Serranocirrhitus Watanabe, 1949
- Genus Serranops Regan, 1914 accepted as Plectranthias Bleeker, 1873
- Genus Serranopsis Casier, 1966 †
- Genus Serranus Cuvier, 1816
- Genus Serrihastaperca Fowler, 1944 accepted as Hyporthodus Gill, 1861
- Genus Smecticus Valenciennes, 1855 accepted as Rypticus Cuvier, 1829
- Genus Smerdis Agassiz, 1833 † accepted as Dapalis Gistl, 1848 †
- Genus Stereolepoides Fowler, 1923 accepted as Epinephelus Bloch, 1793
- Genus Stigmatonotus Peters, 1877
- Genus Suttonia Smith, 1953
- Genus Taeniodon Döderlein in Steindachner & Döderlein, 1883 accepted as Liopropoma Gill, 1861
- Genus Torreyichthys Schwarzhans, Stringer & Takeuchi, 2024 †
- Genus Tosana Smith & Pope, 1906
- Genus Tosanoides Kamohara, 1953
- Species Tosanoides filamentosus Kamohara, 1953
- Species Tosanoides flavofasciatus Katayama & Masuda, 1980
- Genus Trachypoma Günther, 1859
- Genus Triloburus Gill, 1861 accepted as Centropristis Cuvier, 1829
- Genus Triso Randall, Johnson & Lowe, 1989
- Genus Trisotropis Gill, 1865 accepted as Mycteroperca Gill, 1862
- Genus Tulelepis Smith, 1954 accepted as Grammistops Schultz in Schultz, Herald, Lachner, Welander & Woods, 1953
- Genus Uriphaeton Swainson, 1839 accepted as Cephalopholis Bloch & Schneider, 1801
- Genus Variola Swainson, 1839
- Genus Vivero Jordan & Evermann, 1927 accepted as Epinephelus Bloch, 1793
- Genus Xenanthias Regan, 1908 accepted as Plectranthias Bleeker, 1873
- Genus Xystroperca Jordan & Evermann, 1896 accepted as Mycteroperca Gill, 1862
- Genus Ypsigramma Schultz in Schultz, Herald, Lachner, Welander & Woods, 1953 accepted as Liopropoma Gill, 1861
- Genus Zacallanthias Katayama, 1964 accepted as Plectranthias Bleeker, 1873
- Genus Zalanthias Jordan & Richardson, 1910 accepted as Plectranthias Bleeker, 1873
- Family Siganidae Richardson, 1837
- Family Sillaginidae Richardson, 1946
- Family Sparidae Rafinesque, 1818
- Family Sphyraenidae Rafinesque, 1815
- Family Stichaeidae Gill, 1864
- Family Stromateidae Rafinesque, 1810
- Family Symphysanodontidae Katayama, 1984
- Family Teraponidae accepted as Terapontidae Richardson, 1842
- Family Terapontidae Richardson, 1842
- Family Tetragonuridae Risso, 1827
- Family Theraponidae Richardson, 1842 accepted as Terapontidae Richardson, 1842
- Family Tortonesiidae Sorbini, Boscaini & Bannikov, 1991 †
- Family Toxotidae Bleeker, 1859
- Family Trachinidae Rafinesque, 1815
- Family Trachinoidei (awaiting allocation)
- Family Trichiuridae Rafinesque, 1810
- Family Trichiuroidei (awaiting allocation)
- Family Trichodontidae Bleeker, 1859
- Family Trichonotidae Gunther, 1861
- Family Tripterygiidae Whitley, 1931
- Family Trispinacidae Nazarkin, 2002 †
- Family Trypauchenidae Gunther, 1861 accepted as Gobiidae Cuvier, 1816
- Family Trypterigionidae Whitley, 1931 accepted as Tripterygiidae Whitley, 1931
- Family Uranoscopidae Bonaparte, 1831
- Family Xenisthmidae Miller, 1973
- Family Xenocephalidae Kaup, 1858 accepted as Uranoscopidae Bonaparte, 1831
- Family Xiphiidae Rafinesque, 1815
- Family Xiphiorhynchidae Regan, 1909 †
- Family Zanclidae Bleeker, 1876
- Family Zaproridae Jordan, 1896
- Family Zoarcidae Swainson, 1839
- Family Zorzinichthyidae Tyler & Bannikov, 2002 †
- Genus Argestichthys Prokofiev, 2002 †
- Genus Cubariomma Bannikov, 2018 †
- Genus Epibatichthys Prokofiev, 2002 †
- Genus Gilmourella Carnevale & Bannikov, 2019 †
- Genus Latellopsis Bannikov & Zorzin, 2019 †
- Genus Quasinectes Bannikov & Zorzin, 2019 †
- Order Percomorpha incertae sedis
- Order Percopsiformes
- Order Perleidiformes †
- Order Pholidophoriformes †
- Order Pholidophoroidea † accepted as Pholidophoriformes †
- Order Pholidopleuriformes †
- Order Pleuronectiformes
- Order Polymixiiformes
- Order Prohaleciteiformes †
- Order Protacanthopterygii incertae sedis
- Order Ptycholepiformes †
- Order Pycnodontiformes †
- Order Redfieldiiformes †
- Order Saccopharyngiformes
- Order Salmoniformes
- Order Saurichthyiformes †
- Order Scanilepiformes †
- Order Scorpaeniformes
- Order Semionotiformes †
- Order Siluriformes
- Order Sorbininardiformes †
- Order Stephanoberyciformes
- Order Stomiiformes
- Order Synbranchiformes
- Order Syngnathiformes
- Order Tarrasiiformes †
- Order Teleostei incertae sedis
- Order Teleostii (awaiting allocation)
- Order Tetraodontiformes
- Order Tselfatiformes accepted as Tselfatiiformes †
- Order Tselfatiiformes †
- Order Zeiformes
- Genus Avitosmerus Fielitz, 2002 †
- Genus Avonichthys Wilson, Pardo & Anderson, 2018 †
- Genus Bacchiaichthys Bannikov & Sorbini, 2000 †
- Genus Bethesdaichthys Bender, 2001 †
- Genus Bluefieldius Mickle, 2018 †
- Genus Choctawichthys Schwarzhans & Stringer in Stringer et al., 2020 †
- Genus Cladistia Cope, 1870
- Genus Diplospondichthys Filleul & Dutheil, 2004 †
- Genus Fuyuanichthys Xu, Ma & Ren, 2018 †
- Genus Gwyneddocaris Bock, 1946 †
- Genus Otolithopsis Huddleston, 1983 †
- Genus Otolithus Koken, 1884 † accepted as Otolithopsis Huddleston, 1983 †
- Class Agnatha (awaiting allocation)
- Class Cephalaspidomorphi
- Class Chondrichthyes
- Class Conodonta †
- Class Dipnoi
- Class Dipnomorpha accepted as Dipnoi
- Class Galeaspida †
- Class Gnathostomata incertae sedis †
- Class Myxini
- Class Osteichthyes (awaiting allocation)
- Class Osteichthyes incertae sedis †
- Class Ostracodermi †
- Class Pisces (awaiting allocation)
- Class Placodermi †
- Class Pteraspidomorphi †
- Class Sarcopterygii
- Class Thelodonti †
- Genus Emmonsaspis Resser & Howell, 1938 †
- Genus Harajicadectes Choo, Holland, Clement, King, Challands, Young & Long, 2024 †
- Genus Kahamachli Malkani, 2019 †
- Genus Nuucichthys Lerosey-Aubril & Ortega-Hernández, 2024 †
- Genus Rhynchocopros Hunt, Lucas & Spielmann, 2013 †
- Genus Santamariacopros Hunt, Lucas & Spielmann, 2013 †
- Genus Squirmarius McCoy, Wittry, Sadabadi & Mayer, 2023 †
- Class Chordata (awaiting allocation)
- Class Eotetrapodiformes incertae sedis
- Phylum Cnidaria
- Phylum Ctenophora
- Phylum Cycliophora
- Phylum Cycloneuralia incertae sedis
- Phylum Ecdysozoa incertae sedis †
- Phylum Echinodermata
- Phylum Entoprocta
- Phylum Gastrotricha
- Phylum Gnathostomulida
- Phylum Hemichordata
- Phylum Hyolitha †
- Phylum Kinorhyncha
- Phylum Lobopoda †
- Phylum Loricifera
- Phylum Micrognathozoa
- Phylum Mollusca
- Phylum Monoblastozoa accepted as Animalia incertae sedis
- Phylum Nematoda
- Phylum Nematomorpha
- Phylum Nemertea
- Phylum Onychophora
- Phylum Orthonectida
- Phylum Phoronida
- Phylum Placozoa
- Phylum Platyhelminthes
- Phylum Pogonophora accepted as Siboglinidae Caullery, 1914
- Phylum Porifera
- Phylum Priapula accepted as Priapulida
- Phylum Priapulida
- Phylum Problematica † accepted as Animalia incertae sedis
- Phylum Rhombozoa
- Phylum Rotifera
- Phylum Scalidophora incertae sedis
- Phylum Sipuncula
- Phylum Tardigrada
- Phylum Trace fossils †
- Phylum Vendobionta †
- Phylum Vestimentifera accepted as Siboglinidae Caullery, 1914
- Phylum Vetulicolia †
- Phylum Vinctiplicata incertae sedis †
- Phylum Xenacoelomorpha
- Genus Trilobocaris Pribyl, 1953 †
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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