Between brackets is the number of accepted species
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Kingdom Plantae
- Phylum Acritarcha †
- Phylum Algae (awaiting allocation)
- Phylum Algae incertae sedis
- Phylum Anthocerotophyta
- Phylum Bryophyta
- Phylum Calcitarcha †
- Phylum Charophyta
- Phylum Chlorophyta
- Phylum Eophyta †
- Phylum Glaucophyta
- Phylum Gymnospermophyta accepted as Tracheophyta
- Phylum Horneophyta †
- Phylum Magnoliophyta accepted as Tracheophyta
- Phylum Marchantiophyta
- Phylum Picozoa
- Phylum Plantae (awaiting allocation)
- Phylum Prasinodermatophyta
- Phylum Pteridophyta accepted as Tracheophyta
- Phylum Rhodelphidia
- Phylum Rhodophyta
- Phylum Sporae dispersae †
- Phylum Tracheophyta
- Subdivision Lycopodiophytina
- Subdivision Polypodiophytina
- Class Cladoxylopsida † accepted as Polypodiopsida
- Class Equisetopsida accepted as Polypodiopsida
- Class Filicopsida accepted as Polypodiopsida
- Class Polypodiopsida
- Subclass Equisetidae
- Subclass Marattiidae
- Subclass Ophioglossidae
- Subclass Polypodiidae
- Order Cyatheales
- Family Cibotiaceae P. Korall, 2006
- Family Culcitaceae R.E.G. Pichi Sermolli, 2006
- Family Cyatheaceae Kaulfuss, 1827
- Genus Acanthea Lindig, 1861
- Genus Actinophlebia K.B. Presl, 1847 accepted as Cyathea J.E. Smith, 1793
- Genus Alsophila R. Brown, 1810
- Genus Alsophilites M. Hirmer, 1927 †
- Genus Alsophilocaulis C.A. Menéndez, 1961 †
- Genus Amphicosmia Gardner, 1842 accepted as Cyathea J.E. Smith, 1793
- Genus Calymmotheca D. Stur, 1877 †
- Genus Chnoophora Kaulfuss, 1824 accepted as Cyathea J.E. Smith, 1793
- Genus Cibotiocaulis Ogura, 1927 †
- Genus Cnemidaria K.B. Presl, 1836 accepted as Cyathea J.E. Smith, 1793
- Genus Conantiopteris T.C. Lantz, G.W. Rothwell & R.A. Stockey, 1999 †
- Genus Cormiophyllum Newman accepted as Cyathea J.E. Smith, 1793
- Genus Cormophyllum Newman, 1857 accepted as Cyathea J.E. Smith, 1793
- Genus Cyathea J.E. Smith, 1793
- Genus Cyatheopteris W.P. Schimper, 1869 †
- Genus Cyathidaria M.G. Caluff & G. Shelton, 2002
- Genus Cyathocaulis Ogura, 1927 †
- Genus Cyathodendron C.A. Arnold, 1945 †
- Genus Cyathoides E.W. Berry, 1922 †
- Genus Cyathorachis Ogura, 1927 †
- Genus Dendropteridium H. Bancroft, 1932 †
- Genus Dichorexia K.B. Presl, 1847 accepted as Cyathea J.E. Smith, 1793
- Genus Dicksoniopsis E.W. Berry, 1911 †
- Genus Dicranophlebia (Martius) Lindley, 1846 accepted as Cyathea J.E. Smith, 1793
- Genus Disphenia K.B. Presl, 1836 accepted as Cyathea J.E. Smith, 1793
- Genus Eatoniopteris Bommer, 1875 accepted as Cyathea J.E. Smith, 1793
- Genus Eocyathea S.N. Césari, 2006 †
- Genus Fasciostelopteris M. Stopes & Fujii, 1910 †
- Genus Fourniera Bommer ex Fournier, 1873 accepted as Sphaeropteris Bernhardi, 1801
- Genus Guttbiera K.B. Presl ex A.T. Brongniart in A.C.V.D. d'Orbigny, 1849 †
- Genus Gymnopremnon Lindig, 1861 accepted as Cyathea J.E. Smith, 1793
- Genus Gymnosphaera C.L. Blume, 1828
- Genus Haplophlebia (Martius) Lindley, 1846 accepted as Cyathea J.E. Smith, 1793
- Genus Haydenia A.C. Seward, 1912 †
- Genus Heilongjiangcaulis Y.-M. Cheng & X.-N. Yang, 2017 †
- Genus Hemistegia K.B. Presl, 1847 accepted as Cyathea J.E. Smith, 1793
- Genus Hemitelia R. Brown, 1810 accepted as Cyathea J.E. Smith, 1793
- Genus Hymenophyllopsis K.I. Goebel, 1929 accepted as Cyathea J.E. Smith, 1793
- Genus Lophosoria K.B. Presl, 1847
- Genus Lophosoriorhachis H. Nishida, 1982 †
- Genus Microstegnus K.B. Presl, 1847 accepted as Cyathea J.E. Smith, 1793
- Genus Nephelea R. Tryon, 1970 accepted as Alsophila R. Brown, 1810
- Genus Nishidacaulis W.D. Tidwell & H. Nishida, 1993 †
- Genus Oguracaulis W.D. Tidwell, H. Nishida & N. Webster, 1989 †
- Genus Oncopteris Dormitzer in J. Krejci, 1853 †
- Genus Paracyathocaulis H. Nishida, 1989 †
- Genus Protocyathea O. Feistmantel, 1877 †
- Genus Rhizodendron Göppert, 1865 †
- Genus Rickwoodopteris R.A. Stockey & G.W. Rothwell, 2004 †
- Genus Schizocaena J. Smith ex W.J. Hooker, 1838 accepted as Cyathea J.E. Smith, 1793
- Genus Sphaeropteris Bernhardi, 1801
- Genus Thysanobotrya C.R.W.K. van Alderwerelt van Rosenburgh, 1918 accepted as Cyathea J.E. Smith, 1793
- Genus Trachypremnon Lindig, 1861 accepted as Cyathea J.E. Smith, 1793
- Genus Trichipteris K.B. Presl in J.S. Presl & K.B. Presl, 1822 accepted as Cyathea J.E. Smith, 1793
- Species Trichipteris borinquena (Maxon) R. Tryon accepted as Cyathea borinquena (Maxon) Domin
- Species Trichipteris procera (Willd.) R. Tryon accepted as Cyathea pungens (Willd.) Domin
- Genus Trichopteris K.P.J. Sprengel accepted as Trichipteris K.B. Presl in J.S. Presl & K.B. Presl, 1822
- Genus Trichosorus Liebmann, 1849 accepted as Lophosoria K.B. Presl, 1847
- Genus Tympanophora Lindley & W. Hutton, 1835 †
- Genus Yezopteris Ogura, 1930 †
- Family Cyatheales (awaiting allocation)
- Family Dicksoniaceae M.R. Schomburgk, 1848
- Family Hymenophyllopsidaceae Pichi Sermolli, 1970 accepted as Cyatheaceae Kaulfuss, 1827
- Family Lophosoriaceae Pichi Sermolli, 1970 accepted as Dicksoniaceae M.R. Schomburgk, 1848
- Family Loxsomataceae C. Presl, 1847
- Family Metaxyaceae Pichi Sermolli, 1970
- Family Plagiogyriaceae Bower, 1926
- Family Thyrsopteridaceae C. Presl, 1847
- Genus Rafaherbstia E.I Vera & S.N. Césari, 2018 †
- Order Filicales accepted as Polypodiales
- Order Gleicheniales
- Order Hydropteridales † accepted as Salviniales
- Order Hymenophyllales
- Order Marsileales accepted as Salviniales
- Order Osmundales
- Order Palaeophyllales †
- Order Polypodiales
- Order Polypodiidae (awaiting allocation)
- Order Pteridales
- Order Salviniales
- Order Schizaeales
- Genus Discosoropteris J. Pšenička et al., 2022 †
- Genus Furcillopteris I.M. Miller & L.J. Hickey, 2008 †
- Genus Gagariostrobus N.K. Mogutcheva in S.P. Bulynnikova & I.G. Klimova, 1987 †
- Genus Gleichenites A.C. Seward, 1927 † accepted as Korallipteris E.I. Vera & M.G. Passalia, 2012 †
- Genus Korallipteris E.I. Vera & M.G. Passalia, 2012 †
- Genus Mikasapteris H. Nishida, R.A. Stockey, Y. Takebe, J. Legrand & T. Yamada, 2022 †
- Genus Polypodites H.R. Göppert, 1836 †
- Genus Sectilopteris I.M. Miller & L.J. Hickey, 2008 †
- Genus Adelocladoxis T. Durieux, M.A. Lopez, A.W. Bronson & A.M.F. Tomescu, 2021 †
- Genus Anthracochondrus Kusta, 1898 †
- Genus Berendtiopteris E.-M. Sadowski, L.J. Seyfullah & A.R. Schmidt in Sadowski et al., 2019 †
- Genus Bifariusotheca X.H. Zhao ex A.B. Doweld, 2019 †
- Genus Eusphenopteris R. Kidston, 1882 †
- Genus Kamatheca A.B. Doweld, 2019 †
- Genus Paracladoxylon Chu & Tomescu, 2024 †
- Class Protoleptosporangiopsida † accepted as Polypodiopsida
- Class Psilotopsida accepted as Polypodiopsida
- Subdivision Spermatophytina
- Class Progymnospermopsida †
- Class Pteridophyta/Pteridospermophyta (unclassified foliage) †
- Class Rhyniopsida †
- Class Trimerophytopsida †
- Class Zosterophyllopsida †
- Order Stenokoleales †
- Genus Ahnetia A.-L. Decombeix & J. Galtier, 2017 †
- Genus Aysenoxylon R.R. Pujana, J.E. Bostelmann, R.A. Ugalde, M.P. Riquelme & T. Torres, 2023 †
- Genus Dameria A.-L. Decombeix, B. Meyer-Berthaud, J. Galtier, J.A. Talent & R. Mawson, 2011 †
- Genus Dibracophyton S.-G. Hao, J.-Z. Xue, X. Zhu & D.-M. Wang, 2012 †
- Genus Douaphyton H.-H. Xu, Y. Wang, P. Tang & Y. Wang, 2017 †
- Genus Endogenites A.T. Brongniart, 1822 †
- Genus Flabellopteris R.W. Gess & C. Prestianni, 2021 †
- Genus Franhueberia L.A. Hoffman & A.M.F. Tomescu, 2013 †
- Genus Jowingera M.A. Bickner & A.M.F. Tomescu, 2019 †
- Genus Kenrickia S. Toledo & A.M.F. Tomescu in Toledo et al., 2021 †
- Genus Leptocentroxyla M.A. Bickner & A.M.F. Tomescu, 2019 †
- Genus Macrotaeniopteris W.P. Schimper, 1869 †
- Genus Mosacaulis R.W.J.M. van der Ham & J.H.A. van Konijnenburg-van Cittert in van der Ham et al., 2011 †
- Genus Nebuloxyla M.A.K. Lalica & A.M.F. Tomescu, 2023 †
- Genus Ninsaria A.-L. Decombeix, J. Galtier, S. McLoughlin & B. Meyer-Berthaud in Decombeix et al., 2019 †
- Genus Oleandridium W.P. Schimper, 1869 †
- Genus Perplexa K.C. Pfeiler & A.M.F. Tomescu, 2023 †
- Genus Petrosjania S.M. Snigirevsky & A.P. Lyubarova, 2023 †
- Genus Planatophyton P. Gerrienne, B. Meyer-Berthaud, N. Yang, P. Steemans & C.-S. Li, 2014 †
- Genus Poacites Schlotheim ex Ballenstedt, 1822 †
- Genus Sporangites J.W. Dawson, 1863 †
- Genus Stenoloboxyla M.A. Bickner & A.M.F. Tomescu, 2019 †
- Genus Taeniopteris A.T. Brongniart, 1828 †
- Genus Tainioxyla M.A. Bickner & A.M.F. Tomescu, 2019 †
- Genus Thursophyton A.G. Nathorst, 1914-1915 †
- Genus Thursophyton A.G. Nathorst ex E.A.N. Arber, 1921 † accepted as Thursophyton A.G. Nathorst, 1914-1915 †
- Genus Tichavekia J. Pšenička, J. Sakala & P. Kraft in Kraft et al., 2019 †
- Genus Tregiovia G. Forte & E. Kustatscher, 2023 †
- Genus Wilhowia P.G. Gensel, 2022 †
- Genus Xadzigacalix A.A. Klymiuk, G.W. Rothwell & R.A. Stockey, 2022 †
- Genus Xinhangia J.-N. Yang & D.-M. Wang, 2022 †
- Genus Yabeiella S. Ôishi, 1931 †
- Phylum Vendophyta † accepted as Algae incertae sedis
- Class Nematophyceae † accepted as Nematophyta †
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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