Between brackets is the number of accepted species
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2 Shows the number of accepted species within the taxon
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- Biota
- Kingdom Animalia
- Kingdom Archaea
- Kingdom Bacteria
- Kingdom Chromista
- Kingdom Fungi
- Phylum Aphelida accepted as Aphelidiomycota
- Phylum Aphelidiomycota
- Phylum Ascomycota
- Class Archaeorhizomycetes
- Class Arthoniomycetes
- Class Ascomycetes
- Class Ascomycota incertae sedis
- Class Ascomycotina incertae sedis
- Class Dothideomycetes
- Order Abrothallales
- Order Acrospermales
- Order Arthrocatenales
- Order Asterinales
- Order Bezerromycetales accepted as Tubeufiales
- Order Botryosphaeriales
- Order Capnodiales
- Family Aeminiaceae J. Trovão, I. Tiago & A. Portugal, 2019
- Family Antennulariellaceae Woronichin, 1925
- Family Capnodiaceae
- Family Capnodiales incertae sedis
- Genus Baudoinia J.A. Scott & Untereiner, 2007
- Genus Capnobotryella J. Sugiyama, 1987
- Genus Capnocheirides J.L. Crane & S.J. Hughes, 1982
- Genus Capnodinula Batista & Ciferri, 1918
- Genus Comminutispora A.W. Ramaley, 1996
- Genus Elasticomyces L. Zucconi & L. Selbmann, 2008
- Genus Friedmanniomyces Onofri, 1999
- Genus Gangamyces V.B. Hosagoudar, 2012
- Genus Heptaster Ciferri, Batista & Nascimento, 1956
- Genus Hispidoconidioma A. Tsuneda & M.L. Davey, 2010
- Genus Hyphospora A.W. Ramaley, 1996
- Genus Limaciniopsis J.M. Mendoza in F.L. Stevens, 1925
- Genus Micropustulomyces R.W. Barreto in R.W. Barreto, H.C. Evans & C.A. Ellison, 1995
- Genus Monographos Fuckel, 1875 accepted as Scirrhia Nitschke ex Fuckel, 1870
- Genus Monographus Clements & Shear, 1931 accepted as Scirrhia Nitschke ex Fuckel, 1870
- Genus Phaeocercospora P.W. Crous in Crous et al., 2012
- Genus Phaeotheca L. Sigler, A. Tsuneda & J.W. Carmichael, 1981
- Genus Phragmodothidea Dearness & Bartholomew, 1926 accepted as Scirrhia Nitschke ex Fuckel, 1870
- Genus Phyllachora Nitschke ex Fuckel, 1867 accepted as Scirrhia Nitschke ex Fuckel, 1870
- Genus Pseudotaeniolina J.L. Crane & J.D. Schoknecht, 1986
- Genus Rachicladosporium Crous, U. Braun & C.F. Hill, 2007
- Genus Racodium E.M. Fries, 1829
- Genus Recurvomyces L. Selbmann & G.S. de Hoog, 2008
- Genus Rhacodiopsis Donk, 1975 accepted as Racodium E.M. Fries, 1829
- Genus Scirrhia Nitschke ex Fuckel, 1870
- Species Scirrhia acicola (Dearn.) Sigg., 1939 accepted as Mycosphaerella dearnessii M.E. Barr, 1972
- Species Scirrhia agrostidis (Fuckel) G. Winter, 1886
- Species Scirrhia annulata Kohlm., Volkm.-Kohlm. & O.E. Erikss., 1996
- Species Scirrhia aspidiorum (Lib.) Bubák, 1916
- Species Scirrhia bambusae Turconi, 1916 accepted as Placostroma bambusae (Turconi) R. Sprague, 1950
- Species Scirrhia castagnei (Mont.) Nitschke, 1870
- Species Scirrhia confluens Starbäck, 1889 accepted as Scirrhia aspidiorum (Lib.) Bubák, 1916
- Species Scirrhia depauperata (Desm.) Fuckel accepted as Scirrhia rimosa (Alb. & Schwein.) Fuckel, 1870
- Species Scirrhia filicina (Niessl) Sherwood, 1978 accepted as Uredinopsis filicina (Niessl) Magnus, 1893
- Species Scirrhia gangraena (Fr.) Rehm, 1908 accepted as Telimenella gangraena (Fr.) Petr., 1947
- Species Scirrhia groveana Sacc., 1885 accepted as Mycosphaerella groveana (Sacc.) Arx, 1962
- Species Scirrhia insculpta (Wallr.) M.E. Barr, 1972 accepted as Dothidea insculpta Wallr., 1883
- Species Scirrhia junci (Alb. & Schwein.) Rehm, 1908 accepted as Phyllachora junci (Alb. & Schwein.) Fuckel, 1870
- Species Scirrhia osmundae (Peck & Clinton) Arx, 1962
- Species Scirrhia pini A. Funk & A.K. Parker, 1966 accepted as Mycosphaerella pini Rostr., 1957
- Species Scirrhia poae Fuckel, 1870 accepted as Phyllachora graminis (Pers.) Fuckel, 1870
- Species Scirrhia rimosa (Alb. & Schwein.) Fuckel, 1870
- Species Scirrhia setariae (Sacc.) Theiss. & Syd., 1915
- Species Scirrhia sporoboli G.F. Atk., 1897 accepted as Placostroma sporoboli (G.F. Atk.) R. Sprague, 1950
- Genus Scolecostigmina U. Braun In U. Braun, Mouchacca & McKenzie, 1999
- Genus Sporidesmajora J.C. Batzer & P.W. Crous, 2010
- Genus Toxicocladosporium Crous & U. Braun, 2007
- Genus Verrucocladosporium K. Schubert, Aptroot & Crous, 2007
- Genus Xenomeris H. Sydow in H. Sydow & Werdermann, 1924
- Family Cystocoleaceae M.V. Locquin, 1984 ex R. Lücking, B.P. Hodkinson & S.D. Leavitt, 2016
- Family Davidiellaceae
- Family Discellaceae accepted as Mycosphaerellaceae
- Family Euantennariaceae
- Family Metacapnodiaceae
- Family Mycosphaerellaceae
- Family Piedraiaceae
- Family Schizothyriaceae
- Family Teratosphaeriaceae
- Order Catinellales
- Order Cladoriellales
- Order Collemopsidiales
- Order Coniosporiales
- Order Dothideales
- Order Dothideomycetes incertae sedis
- Order Dothideomycetidae incertae sedis
- Order Dyfrolomycetales
- Order Eremithallales
- Order Eremomycetales
- Order Hysteriales
- Order Jahnulales
- Order Kirschsteiniotheliales
- Order Koralionastetales
- Order Lembosinales
- Order Lichenotheliales
- Order Meliolales
- Order Microthyriales
- Order Minutisphaerales
- Order Monoblastiales
- Order Murramarangomycetales
- Order Muyocopronales
- Order Myriangiales
- Order Mytilinidiales
- Order Natipusillales
- Order Neodactylariales
- Order Parmulariales
- Order Patellariales
- Order Phaeotrichales
- Order Pleosporales
- Order Stigmatodiscales
- Order Strigulales
- Order Superstratomycetales
- Order Trypetheliales
- Order Tubeufiales
- Order Valsariales
- Order Venturiales
- Order Wiesneriomycetales accepted as Tubeufiales
- Order Zeloasperisporiales
- Class Eurotiomycetes
- Class Geoglossomycetes
- Class Laboulbeniomycetes
- Class Lecanoromycetes
- Class Leotiomycetes
- Class Lichinomycetes
- Class Neolectomycetes
- Class Orbiliomycetes
- Class Pezizomycetes
- Class Pneumocystidomycetes
- Class Saccharomycetes
- Class Sareomycetes
- Class Schizosaccharomycetes
- Class Sordariomycetes
- Class Taphrinomycetes
- Class Xylonomycetes
- Phylum Basidiobolomycota accepted as Zygomycota
- Phylum Basidiomycota
- Phylum Blastocladiomycota
- Phylum Calcarisporiellomycota accepted as Zygomycota
- Phylum Caulochytriomycota accepted as Chytridiomycota
- Phylum Chytridiomycota
- Phylum Entomophthoromycota
- Phylum Fungi (awaiting allocation)
- Phylum Fungi incertae sedis
- Phylum Glomeromycota
- Phylum Kickxellomycota accepted as Zygomycota
- Phylum Monoblepharomycota accepted as Chytridiomycota
- Phylum Mortierellomycota accepted as Zygomycota
- Phylum Mucoromycota accepted as Zygomycota
- Phylum Nematophyta †
- Phylum Neocallimastigomycota accepted as Chytridiomycota
- Phylum Olpidiomycota accepted as Chytridiomycota
- Phylum Rozellomycota
- Phylum Zoopagomycota accepted as Zygomycota
- Phylum Zygomycota
- Genus Celluloxylon J.W. Dawson, 1881 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Mucorites Meschinelli, 1898 † accepted as Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mucorites Meschinelli ex Lindau, 1900 †
- Genus Mycelites W. Roux, 1887 †
- Genus Mycobystrovia Goujet & Locquin, 1979 †
- Genus Nematophycus Carruthers, 1872 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Nematophyton J.W. Dawson, 1888 † accepted as Prototaxites J.W. Dawson, 1859 †
- Genus Ourasphaira C.C. Loron, R.H. Rainbird, E.C. Turner, J.W. Greenman & E.J. Javaux, 2019 †
- Genus Petsamomyces M.Y. Belova, 2006 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant in Harker et al., 1990 † accepted as Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Pilula S.D. Harker & W.A.S. Sarjeant ex S.D. Harker & W.A.S. Sarjeant, 1992 †
- Genus Polycellaria H.D. Pflug, 1965 †
- Genus Prototaxites J.W. Dawson, 1859 †
- Genus Rhyniomycelium M. Krings & C.J. Harper, 2023 †
- Kingdom Plantae
- Kingdom Protista accepted as Protozoa
- Kingdom Protozoa
- Kingdom Viruses
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