• Ainoa mooreana (Carroll) Lumbsch & I. Schmitt, 2001
• Baeomyces absolutus Tuck., 1859 accepted as Dibaeis absoluta (Tuck.) Kalb & Gierl, 1993
• Baeomyces anomaeus Ach. accepted as Cladonia ramulosa (With.) J.R. Laundon, 1984
• Baeomyces anomalus (Ach.) Taylor accepted as Herteliana taylorii (Salwey) P. James, 1980
• Baeomyces arcuatus Stirt., 1875 accepted as Dibaeis arcuata (Stirt.) Kalb & Gierl, 1993
• Baeomyces caespiticius Pers. accepted as Cladonia caespiticia (Pers.) Flörke, 1887
• Baeomyces calicioides Delise ex Duby, 1830 accepted as Gomphillus calycioides (Delise ex Duby) Nyl., 1855
• Baeomyces carneus Flörke, 1821
• Baeomyces cenoteus Ach. accepted as Cladonia cenotea (Ach.) Schaer., 1823
• Baeomyces ceratites Wahlenb. accepted as Siphula ceratites (Wahlenb.) Fr., 1831
• Baeomyces ericetorum (L.) anon. accepted as Icmadophila ericetorum (L.) Zahlbr., 1895
• Baeomyces erythrellus (Mont.) Nyl., 1857 accepted as Phyllobaeis erythrella (Mont.) Kalb, 1993
• Baeomyces furfuraceus (L.) Taylor, 1836 accepted as Chaenotheca furfuracea (L.) Tibell, 1984
• Baeomyces heteromorphus Nyl. ex C. Bab. & Mitt., 1859
• Baeomyces imbricatus Hook., 1822 accepted as Phyllobaeis imbricata (Hook.) Kalb & Gierl, 1993
• Baeomyces microcephalus Taylor, 1836 accepted as Gomphillus calycioides (Delise ex Duby) Nyl., 1855
• Baeomyces microphyllus (Sw.) Eaton, 1836 accepted as Fuscopannaria leucophaea (Vahl) P.M. Jørg., 1994
• Baeomyces nanus (Ach.) Hepp, 1824 accepted as Leprocaulon microscopicum (Vill.) Gams, 1974
• Baeomyces placophyllus Ach., 1803
• Baeomyces pocillum Ach. accepted as Cladonia pocillum (Ach.) O.J. Rich., 1803
• Baeomyces retiporus Labill., 1806 accepted as Cladia retipora (Labill.) Nyl., 1876
• Baeomyces rhodochrous Kremp., 1876 accepted as Phyllobaeis rhodochroa (Kremp.) Kalb, 1993
• Baeomyces roseus Pers., 1794 accepted as Dibaeis baeomyces (L. f.) Rambold & Hertel, 1993
• Baeomyces roseus sensu auct. Austral.p.p. accepted as Dibaeis absoluta (Tuck.) Kalb & Gierl, 1993
• Baeomyces roseus sensu auct. Austral.p.p. accepted as Dibaeis arcuata (Stirt.) Kalb & Gierl, 1993
• Baeomyces rubescens Vain., 1890 accepted as Phyllobaeis rubescens (Vain.) Kalb, 1993
• Baeomyces rubiformis Wahlenb., 1803 accepted as Psora rubiformis (Wahlenb. ex Ach.) Hook., 1844
• Baeomyces rufus (Huds.) Rebent., 1804
• Baeomyces splachnirimus (Hook. f. & Taylor) Mitt., 1860 accepted as Icmadophila splachnirima (Hook. f. & Taylor) D.J. Galloway, 2000
• Baeomyces strepsilis Ach. accepted as Cladonia strepsilis (Ach.) Vain., 1894
• Phyllobaeis erythrella (Mont.) Kalb, 1993
• Phyllobaeis imbricata (Hook.) Kalb & Gierl, 1993
• Phyllobaeis linearis (B.G. de Vries) V. Marcano & Sipman, 1996
• Phyllobaeis rhodochroa (Kremp.) Kalb, 1993
• Phyllobaeis rubescens (Vain.) Kalb, 1993