• Agarella gracilis Dunkerly, 1915
• Alataspora adelia Aseeva, 2003
• Alataspora africana Shulman, Kovaljova & Dubina, 1979
• Alataspora bialata Aseeva, 1992
• Alataspora caproi Gaevskaya & Kovaljova, 1984
• Alataspora contrariocapsularia Shulman, Kovaljova & Dubina, 1979
• Alataspora lepidum Gaevskaya & Kovaljova, 1979
• Alataspora longialata Aseeva, 2003
• Alataspora merluccii Kalavati, Longshaw & Mackenzie, 1995
• Alataspora samaroidea Shulman, Kovaljova & Dubina, 1979
• Alataspora serenum Gaevskaya & Kovaljova, 1979
• Alataspora solomoni Yurakhno, 1988
• Alataspora subtilis Kovalyova, Velev & Vladov, 1993
• Alataspora tetricum Gaevskaya & Kovaljova, 1979
• Alatospora adelia Aseeva, 2003 accepted as Alataspora adelia Aseeva, 2003
• Alatospora africana Shulman, Kovaleva & Dubina, 1979 accepted as Alataspora africana Shulman, Kovaljova & Dubina, 1979
• Alatospora bialata Aseeva, 1992 accepted as Alataspora bialata Aseeva, 1992
• Alatospora caproi Gayevskaya & Kovalyova, 1984 accepted as Alataspora caproi Gaevskaya & Kovaljova, 1984
• Alatospora contrariocapsularia Shulman, Kovaleva & Dubina, 1979 accepted as Alataspora contrariocapsularia Shulman, Kovaljova & Dubina, 1979
• Alatospora lepidum Gaevskaya & Kovaleva, 1979 accepted as Alataspora lepidum Gaevskaya & Kovaljova, 1979
• Alatospora longialata Aseeva, 2003 accepted as Alataspora longialata Aseeva, 2003
• Alatospora merluccii Kalavati, Longshaw & Mackenzie, 1995 accepted as Alataspora merluccii Kalavati, Longshaw & Mackenzie, 1995
• Alatospora serenum Gaevskaya & Kovaleva, 1979 accepted as Alataspora serenum Gaevskaya & Kovaljova, 1979
• Alatospora solomoni Jurachno, 1988 accepted as Alataspora solomoni Yurakhno, 1988
• Alatospora subtilis Kovalyova, Velev & Vladov, 1993 accepted as Alataspora subtilis Kovalyova, Velev & Vladov, 1993
• Alatospora tetricum Gaevskaya & Kovaleva, 1979 accepted as Alataspora tetricum Gaevskaya & Kovaljova, 1979
• Antonactinomyxon eiseniellae
• Antonactinomyxon mississippiensis
• Auerbachia anomala Meglitsch, 1968
• Auerbachia chorinemusi Padma-Dorothy, Kalavati & Vaidchi, 1998
• Auerbachia monstrosa Meglitsch, 1968
• Auerbachia pulchra Lom, Noble & Laird, 1975
• Bipteria admiranda Kovaljova Zubchenko & Krasin, 1983
• Bipteria indica Kalavati & Anuradha, 1995
• Bipteria magna Kovaljova, Zubtchenko & Krasin, 1983
• Bipteria merluccii Kovalyova, Velev & Vladov, 1993
• Bipteria minima Kovaljova, Zubtchenko & Krasin, 1983
• Bipteria nototheniae Kovaljova & Rodjuk, 1991
• Buddenbrockia plumatellae Schroeder, 1910
• Cardimyxobolus leshanensis Ma, Dong & Wang, 1982
• Cardimyxobolus rhodeus Ma, Zhao & Ma in Chen & Ma, 1998
• Caudomyxum nanum Bauer, 1948
• Ceratomyxa abbreviata (Davis, 1917)
• Ceratomyxa acadiensis Mavor, 1915
• Ceratomyxa acanthopagri (Zhao & Song, 2003)
• Ceratomyxa acanthuri Kpatcha, Diebakate, Faye & Toguebaye, 1996
• Ceratomyxa adeli (Bakay & Grudnev, 1998)
• Ceratomyxa agglomerata Davis, 1917
• Ceratomyxa aggregata Davis, 1917
• Ceratomyxa agilis Thélohan, 1892 accepted as Leptotheca agilis (Thélohan, 1892)
• Ceratomyxa allantoidea Gaevskaya & Kovaljova, 1984
• Ceratomyxa amatea (Aseeva, 2001)
• Ceratomyxa americana Wierzbicka, 1987
• Ceratomyxa ammodytis Zhao & Song, 2003
• Ceratomyxa amorpha Davis, 1917
• Ceratomyxa ampla (Kovaljova, Rodjuk & Grudnev, 2002)
• Ceratomyxa anguillae Tuzet & Ormieres, 1957
• Ceratomyxa angusta Meglitsch, 1960
• Ceratomyxa annulata (Meglitsch, 1960)
• Ceratomyxa antarctica Kovaljova, Rodjuk & Grudney, 2002
• Ceratomyxa apogoni (Narasimhamurti, Kalavati, Anuradha & Padma Dorothy, 1990)
• Ceratomyxa appendiculata Thélohan, 1892
• Ceratomyxa arcuata Thélohan, 1892
• Ceratomyxa arripica Su & White, 1994
• Ceratomyxa artedielli Polyanskii, 1955
• Ceratomyxa aspera Aseeva, 2003
• Ceratomyxa attenuata Davis, 1917
• Ceratomyxa auerbachi Kabata, 1962
• Ceratomyxa azonusi Aseeva, 2003
• Ceratomyxa beloneae Lubat, Radujkovic, Marques & Bouix, 1989
• Ceratomyxa beveridgei (Moser, Kent & Dennis, 1989)
• Ceratomyxa buri Yokoyama & Fukuda, 2001
• Ceratomyxa castigata Meglitsch, 1960
• Ceratomyxa castigatoides Meglitsch, 1960
• Ceratomyxa centriscopsi Gunter & Adlard, 2010
• Ceratomyxa choleospora Landsberg, 1993
• Ceratomyxa chromis Lubat, Radujkovic, Marques & Bouix, 1989
• Ceratomyxa coelorhyncha (Yoshino & Noble, 1973)
• Ceratomyxa constricta (Fujita, 1923)
• Ceratomyxa constricta Meglitsch, 1960
• Ceratomyxa coris Georgévitch, 1916
• Ceratomyxa costata Aseeva, 2001
• Ceratomyxa cyanoglossi Das, Pal & Ghosh, 1989
• Ceratomyxa daysciaenae Sarkar & Pramanik, 1994
• Ceratomyxa declivis Meglitsch, 1960
• Ceratomyxa delicatula Kovaljova & Gajevskaja, 1988
• Ceratomyxa diplodae Lubat, Radujkovic, Marques & Bouix, 1989
• Ceratomyxa dissostichi Brickle, Kalavati & MacKenzie, 2001
• Ceratomyxa drepanopsettae Averintzev, 1908
• Ceratomyxa dubia Dunkerley, 1921
• Ceratomyxa durusa Aseeva, 2003
• Ceratomyxa elegans Jameson, 1929
• Ceratomyxa ellipsoidea Kovaljova, Rodjuk & Grudney, 2002
• Ceratomyxa elongata (Thélohan, 1895)
• Ceratomyxa elongata Meglitsch, 1960
• Ceratomyxa etroplusi Rajendran & Janardanan, 1992
• Ceratomyxa etrumuci (Dogiel, 1948)
• Ceratomyxa faba Meglitsch, 1960
• Ceratomyxa fisheri Jameson, 1929
• Ceratomyxa fistulariae Kpatcha, Diebakate, Faye & Toguebaye, 1996